New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5083008	64 (0.980)	4 (0.060)	4/252	NT	6.6%	coding (1258/2625 nt)	alaS	alanine‑‑tRNA ligase
	?	NC_002947	= 5083059	53 (0.850)					coding (1207/2625 nt)	alaS	alanine‑‑tRNA ligase

TGTCGACCTTGACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGC  >  NC_002947/5082912‑5083201                                                                                                                                                     |                                                                                                                                               tGTCGACCTTGACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCgg                                                                                                                                                >  2:147072/1‑148 (MQ=255) tGTCGACCTTGACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGg                                                                                                                                               >  7:26330‑M2/1‑148 (MQ=255) tGTCGACCTTGACAAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCAATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCgg                                                                                                                                                >  1:258592/1‑148 (MQ=255)   tCGAGCTTGACCAGGATTTGGTCCTCCATTCCGACGGCGCTGGCGGCGCGGGCGCGCTGACGCTGGGCGTCCATTTCCCGCTCGAAGCCGGCTTCGTCGATCGTCAGCGCTC‑TCTCACGTGCGATGTCGGCAGGGAGGTCCATCTGGac                                                                                                                                             <  4:276581/149‑2 (MQ=255)     gACCTTGACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGgaag                                                                                                                                            >  5:172539‑M2/1‑144 (MQ=255)        cTTGACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCAt                                                                                                                                        <  2:309495/149‑1 (MQ=255)           gACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAg                                                                                                                                      <  6:372776/148‑1 (MQ=255)           gACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAg                                                                                                                                      <  7:138634/148‑1 (MQ=255)                ggCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATa                                                                                                                                       >  2:396290/1‑142 (MQ=255)                ggCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATa                                                                                                                                       <  1:396290/142‑1 (MQ=255)                     ttgtAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAg                                                                                                                           <  7:112857/149‑1 (MQ=255)                           tCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGaa                                                                                                                     >  3:205818/1‑149 (MQ=255)                              aTGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGTGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAacac                                                                                                                  >  2:45246/1‑149 (MQ=255)                                 ccGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAAcaccac                                                                                                               >  6:48726/1‑149 (MQ=255)                                  cGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACg                                                                                                              >  2:138868/1‑149 (MQ=255)                                          cTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCgg                                                                                                      <  1:138868/149‑1 (MQ=255)                                           tGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCgg                                                                                                      >  3:177633/1‑148 (MQ=255)                                             gCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTa                                                                                                    <  1:18027/148‑1 (MQ=255)                                                 aGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACg                                                                                               >  5:4851/1‑149 (MQ=255)                                                 aGCGGGCGCGCTCACGCTGGGCGTCCATTTAACGCTCGAAGCCGGCTTCGTCGATGGTAAGCTCAC‑GCTAACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGAGTCGTAGACGTTGAACACAACGGCGCCCGGAACCAct                                                                                               >  4:24428/1‑148 (MQ=255)                                                       cgcgcTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCt                                                                                         <  5:48726/149‑1 (MQ=255)                                                          gcTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCttt                                                                                       >  7:281380/1‑148 (MQ=255)                                                           cTCACGCTGGGGGTTCATTTCACGCTCGAAGCCGGCTTCGGCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCATGGCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCa                                                                                     <  2:258592/149‑1 (MQ=255)                                                                gCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTCCAGCTgg                                                                                >  5:19973/1‑149 (MQ=255)                                                                  tGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCttt                                                                                       <  4:350122/140‑1 (MQ=255)                                                                  tGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCttt                                                                                       >  3:350122/1‑140 (MQ=255)                                                                  tGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGc                                                                              <  4:177633/149‑1 (MQ=255)                                                                  tGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGc                                                                              >  6:65664/1‑149 (MQ=255)                                                                       gTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCACGGCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAgg                                                                          >  1:288577/1‑149 (MQ=255)                                                                          cATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCtt                                                                      >  5:384165/1‑149 (MQ=255)                                                                           aTTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTg                                                                     >  1:253086/1‑149 (MQ=255)                                                                           aTTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTg                                                                     >  5:306118/1‑149 (MQ=255)                                                                            tttCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTCCAGCTGGGCCAGGTCTTGc                                                                    <  6:19973/149‑1 (MQ=255)                                                                               cACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTc                                                                  >  5:121439/1‑148 (MQ=255)                                                                               cACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTc                                                                  >  8:189423/1‑148 (MQ=255)                                                                                aCGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACGACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGa                                                                <  7:189423/149‑1 (MQ=255)                                                                                aCGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGa                                                                <  4:205818/149‑1 (MQ=255)                                                                                 cGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAg                                                               <  2:288577/149‑1 (MQ=255)                                                                                    tCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGGCAGGTCCATCGGGAATCCATAGGTGTCGTACAGCTTGACCACAACGTCGCCCGGTACCACGTAGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGAt                                                            >  3:239231/1‑149 (MQ=255)                                                                                      gAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATg                                                           <  2:253086/148‑1 (MQ=255)                                                                                      gAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATg                                                           <  6:306118/148‑1 (MQ=255)                                                                                           cGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGgaagccggcttcgagcgtgaaatggacgcccagcgtgagcgcgcccgctccgccagcgccttcggcatggattacaacagcctggtcaag                                                      <  7:385425‑M2/148‑91 (MQ=255)                                                                                           cGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTc                                                                                             >  4:373930/1‑109 (MQ=255)                                                                                           cGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTc                                                                                             <  3:373930/109‑1 (MQ=255)                                                                                            ggCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGgaagccggcttcgagcgtgaaatggacgcccagcgtgagcgcgcccgctccgccagcgccttcggcatggattacaacagcctggtcaaggt                                                    <  8:101858‑M2/149‑93 (MQ=255)                                                                                                   tcgATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTc                                             >  5:166048/1‑149 (MQ=255)                                                                                                         gTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGgaagccggcttcgagcgtgaaatggacgcccagcgtgagcgcgcccgctccgccagcgccttcggcatggattacaacagcctggtcaaggtcgacagcgccac                                        >  8:385425‑M2/1‑44 (MQ=255)                                                                                                         gTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAggg                                        <  6:4851/148‑1 (MQ=255)                                                                                                              ctcac‑gctcacgAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTgg                                  >  6:134157/1‑149 (MQ=255)                                                                                                                 ac‑gctcacgAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCg                                >  5:163113/1‑148 (MQ=255)                                                                                                                    gctcacgAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAAc                             >  6:138283/1‑149 (MQ=255)                                                                                                                      tcacgAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGa                                                                >  8:214470/1‑112 (MQ=255)                                                                                                                      tcacgAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGa                                                                <  7:214470/112‑1 (MQ=255)                                                                                                                       cacgAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGc                          >  1:64909/1‑149 (MQ=255)                                                                                                                         cgAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGctc                        <  6:163113/149‑1 (MQ=255)                                                                                                                              gATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACAACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTcttctt                   >  2:148762/1‑149 (MQ=255)                                                                                                                                tGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCg                 <  5:138283/149‑1 (MQ=255)                                                                                                                                      cAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCtt            >  6:96088/1‑148 (MQ=255)                                                                                                                                       aGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGa          <  6:166048/149‑1 (MQ=255)                                                                                                                                       aGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGa          <  5:134157/149‑1 (MQ=255)                                                                                                                                       aGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGa          <  3:24428/149‑1 (MQ=255)                                                                                                                                         tCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACAACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAg         >  1:123517/1‑148 (MQ=255)                                                                                                                                            ggTCCATCGGgaagccggcttcgagcgtgaaatggacgcccagcgtgagcgcgcccgctccgccagcgccttcggcatggattacaacagcctggtcaaggtcgacagcgccaccgagttcctcggttacgacgccaccgagggccagg     >  7:101858‑M2/1‑10 (MQ=255)                                                                                                                                            ggTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCAcg     <  6:358866/149‑1 (MQ=255)                                                                                                                                             gTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCAcgc    >  1:162780/1‑149 (MQ=255)                                                                                                                                               ccATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACgcgc  >  2:392138/1‑149 (MQ=255)                                                                                                                                                cATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACgcgc  <  5:65664/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               TGTCGACCTTGACCAGGCTGTTGTAATCCATGCCGAAGGCGCTGGCGGAGCGGGCGCGCTCACGCTGGGCGTCCATTTCACGCTCGAAGCCGGCTTCGTCGATGGTCAGCTCAC‑GCTCACGAGCGATGTCGGCAGTCAGGTCCATCGGGAAGCCATAGGTGTCGTACAGCTTGAACACCACGTCGCCCGGTACCACGTCGCCTTTCAGCTGGGCCAGGTCTTGCTCGAGGATGCGCAGGCCCTGCTCCAGGGTCTTGGCGAACTGCTCTTCTTCGGCCTTGAGCACGCGC  >  NC_002947/5082912‑5083201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.