New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5442678	52 (0.800)	3 (0.050)	3/254	NT	5.2%	intergenic (‑95/+113)	PP_4780/PP_4781	acyl‑CoA dehydrogenase/sensor histidine kinase
	?	NC_002947	= 5442726	60 (0.960)					intergenic (‑143/+65)	PP_4780/PP_4781	acyl‑CoA dehydrogenase/sensor histidine kinase

CGAGCGGCGGCGGCTGGTTGGTGACTTCGTGGGTTTCAGCGTACTGGTGCAGGCTCATCGGGGGGCTCCTGGATCCGGGTAGGCTTGAGAGACCCAGTGAAGCACTGCTTGCGGGGTAGTCAAAGGGGTATTAATGACTAAACGTGTGGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5442526‑5442678 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgcCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACGCGCGCACGCCAGCAACCACACGTTTAGTCATTAATACCCCTTTGACTACCCCGCAAGCAGTGCTTCACTGGGTCTCTCAAGCCTACCCGGATCCAGGAGCCCCCCGATGAG  <  NC_002947/5442726‑5442579                                                                                                                                                                                                                                                                                                               CGAGCGGCGGCGGCTGGTTGGTGACTTCGTGGGTTTCAGCGTACTGGTGCAGGCTCATCGGGGGGCTCCTGGATCCGGGTAGGCTTGAGAGACCCAGTGAAGCACTGCTTGCGGGGTAGTCAAAGGGGTATTAATGACTAAACGTGTGG                                                                                                                                                          <  3:10722/149‑1  GAGCGGCGGCGGCTGGTTGGTGACTTCGTGGGTTTCAGCGTACTGGTGCAGGCTCATCGGGGGGCTCCTGGATCCGGGTAGGCGTGAGAGACCCAGTGAAGCACTGCTGGCGGGGTAGACAAAGGGGTATTAAAGACTAAACGTGTGGT                                                                                                                                                         >  3:154882/1‑149                                                           CGGGGGGGTGCTGGATCCGGGTACGCTTGAGTGACCCAGTGAAGCTCTGCTTGCGGGGTAGTCAAAGGGGTATTAATGACTAAACGTGTGGTTGCCGCCACCACCGTATTCGCGGGTTAACCCGCTCCTACGCGCGCACGCCAGCAAC                                                                                                 <  8:188790/148‑1                                                                 GCTCCGGGATCCGGGTAGGCTTGAGAGACCCAGTGAAGCACTGCTTGCGGGGTAGTCAAAGGGGTATTAATGACTAAACGTGTGGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACGCGCGCACGCCAGCAACCACACGT                                                                                          <  7:61787/149‑1                                                                                       GAGAGACCCAGTGAAGCACTGCTTGCGGGGTAGTCAAAGGGGTATTAATGACTAAACGTGTGGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACGCGCGCACGCCAGCAACCACACGTTTAGTCATTAATACCCCTTT                                                                      <  8:112667/147‑1                                                                                                                                                      TTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACGCGCGCACGCCAGCAACCACACGTTTAGTCATTAATACCCCTTTGACTACCCCGCAAGCAGTGCTTCACTGGGTCTCTCAAGCCTACCCGGATCCAGGAGCCCCCCGAT     <  4:362010/149‑1                                                                                                                                                         CCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACGCGCGCACGCCAGCAACCACACGTTTAGTCATTAATACCCCTTTGACTACCCCGCAAGCAGTGCTTCACTGGGTCTCTCAAGCCTACCCGGATCCAGGAGCCCCCCGATGAG  >  8:36705/1‑149                                                                                                                                                         CCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACGCGCGCACGCCAGCAACCACACGTTTAGTCATTAATACCCCTTTGACTACCCCGCAAGCAGTGCTTCACTGGGTCTCTCAAGCCTACCCGGATCCAGGAGCCCCCCGATGA   <  6:406443/148‑1                                                                                                                                                         CCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACGCGCGCACGCCAGCAACCACACGTTTAGTCATTAATACCCCTTTGACTACCCCGCAAGCAGTGCTTCACTGGGTCTCTCAAGCCTACCCGGATCCAGGAGCCCCCCGATGA   <  8:51448/148‑1                                                                                                                                                                                                                                                                                                               CGAGCGGCGGCGGCTGGTTGGTGACTTCGTGGGTTTCAGCGTACTGGTGCAGGCTCATCGGGGGGCTCCTGGATCCGGGTAGGCTTGAGAGACCCAGTGAAGCACTGCTTGCGGGGTAGTCAAAGGGGTATTAATGACTAAACGTGTGGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5442526‑5442678 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgcCGCCACCACCGTATTCGCGGGTAAACCCGCTCCTACGCGCGCACGCCAGCAACCACACGTTTAGTCATTAATACCCCTTTGACTACCCCGCAAGCAGTGCTTCACTGGGTCTCTCAAGCCTACCCGGATCCAGGAGCCCCCCGATGAG  <  NC_002947/5442726‑5442579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.