New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5548441 =	56 (0.860)	3 (0.050)	3/246	NT	5.7%	coding (613/2574 nt)	rnr	exoribonuclease R
	?	NC_002947	5548480 =	48 (0.790)					coding (574/2574 nt)	rnr	exoribonuclease R

CACGAAAGCGTGGTCGGCCGCTATTTCGAAGAAGGCGGCATCGGCTACGTGACCCCGGACAACCCGAAGATCCAGCAGGAAGTGCTGGTGACCGCCGGGCGCAACGGCGGTGCCAAGATCGGCCAGTTCGTCGAGATCAAGATCACCCACTGGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5548597‑5548441 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actggccgaTCTTGGCACCGCCGTTGCGCCCGGCGGTCACCAGCACTTCCTGCTGGATCTTCGGGTTGTCCGGGGTCACGTAGCCGATGCCGCCTTCTTCGAAATAGCGGCCGACCACGCTTTCGTGGGCACGGGAGATGACTTCGACCAGCA  >  NC_002947/5548480‑5548623                                                                                                                                                                                                                                                                                                               CACGAAAGCGTGGTCGGCCGCTATTTCGAAGAAGGCGGCATCGGCTACGTGACCCCGGACAACCCGAAGATCCAGCAGGAAGTGCTGGTGACCGCCGGGCGCAACGGCGGTGCCAAGATCGGCCAGTTCGTCGAGATCAAGATCACCCA                                                                                                                                                          >  2:227547/1‑149         CGTGGTCGGCCGCTATTTCGAAGAAGGCGGCATCGGCTACGTGACCCCGGACAACCCGAAGATCCAGCAGGAAGTGCTGGTGACCGCCGGGCGCAACGGCGGTGCCAAGATCGGCCAGTTCGTCGAGATCAAGATCACCCACTGGCCGA                                                                                                                                                  >  7:211418/1‑149                                                                                                               TGCCAAGATCGGCCAGTTCGTCGAGATCAAGATCACCCACTGGCCGATCTTGGCACCGCCGTTGCGCCCGGCGGTCACCAGCACTTCCTGCTGGATCTTCGGGTTGTCCGGGGTCACGTAGCCGATGCCGCCTTCT                                                         >  5:73368/1‑136                                                                                                               TGCCAAGATCGGCCAGTTCGTCGAGATCAAGATCACCCACTGGCCGATCTTGGCACCGCCGTTGCGCCCGGCGGTCACCAGCACTTCCTGCTGGATCTTCGGGTTGTCCGGGGTCACGTAGCCGATGCCGCCTTCT                                                         <  6:73368/136‑1                                                                                                                      ATCGGCCAGTTCGTCGAGATCAAGATCACCCACTGGCCGATCTTGGCACCGCCGTTGCGCCCGGCGGTCACCAGCACTTCCTGCTGGATCTTCGGGTTGTCCGGGGTCACGTAGCCGATGCCGCCTTCTTCGAAATAGCGGCCGACCAC                                     >  1:361130/1‑149                                                                                                                                                      CTGGCCGATCTTGGCACCGCCGTTGCGCCCGGCGGTCACCAGCACTTCCTGCTGGATCTTCGGGTTGTCCGGGGTCACGTAGCCGATGCCGCCTTCTTCGAAATAGCGGTCGACCACGCTTTCGTGGGCACGGGAGATGACTTCGAC       >  7:221044/1‑147                                                                                                                                                       TGGCCGATCTTGGCACCGCCGTTGCGCCCGGCGGTCACCAGCACTTCCTG                                                                                                       >  5:307983/1‑50                                                                                                                                                       TGGCCGATCTTGGCACCGCCGTTGCGCCCGGCGGTCACCAGCACTTCCTG                                                                                                       <  6:307983/50‑1                                                                                                                                                         gcaGATCTTGGCACCGCCTTTGCGCCCGGCGGTCACCAGCACTTCCTGCTGGATCTTCGGGTTGTCCGGGGTCACGTAGCCGATGACGCCTTCTTCGAAATAGCGGCCGACCACGCTTTCGTGGGCACGGGAGATGACTTCGACCAGCA  >  8:319754/4‑149                                                                                                                                                         GCCGATCTTGGCACCGCCGTTGCGCCCGGCGGTCACCAGCACTTCCTGCTGGATCTTCGGGTTGTCCGGGGTCACGTAGCCGATGCCGCCTTCTTCGAAATAGCGGCCGACCACGCTTTCGTGGGCACGGGAGATGACTTCGACCAGCA  >  2:2646/1‑149                                                                                                                                                                                                                                                                                                               CACGAAAGCGTGGTCGGCCGCTATTTCGAAGAAGGCGGCATCGGCTACGTGACCCCGGACAACCCGAAGATCCAGCAGGAAGTGCTGGTGACCGCCGGGCGCAACGGCGGTGCCAAGATCGGCCAGTTCGTCGAGATCAAGATCACCCACTGGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5548597‑5548441 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actggccgaTCTTGGCACCGCCGTTGCGCCCGGCGGTCACCAGCACTTCCTGCTGGATCTTCGGGTTGTCCGGGGTCACGTAGCCGATGCCGCCTTCTTCGAAATAGCGGCCGACCACGCTTTCGTGGGCACGGGAGATGACTTCGACCAGCA  >  NC_002947/5548480‑5548623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.