| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5961195 | 61 (0.940) | 4 (0.060) | 4/254 | NT | 6.2% | coding (91/1248 nt) | lysA‑II | diaminopimelate decarboxylase |
| ? | NC_002947 | = 5961227 | 63 (1.010) | coding (123/1248 nt) | lysA‑II | diaminopimelate decarboxylase | |||||
GCAGCCCGAGCTGCAGTCCGAGTCCGAGCCCGAGCAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5961044‑5961195‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctacgGTACTGGGCCTCGATGTGGGCGCGCGAGTACACGTAGGTGGGGGTGCCGTAACGTTCAGCAATGGCCGACAGGGCCACGCCTTCCGCGAACAGCTCACCGTCGCGGTAGTTGAAAGCGTTCATCTGGTTTCCTTACTGCGCTGGCGA < NC_002947/5961227‑5961081 GCAGCCCGAGCTGCAGTCCGAGTCCGAGCCCGAGCAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACC > 1:260757/1‑148GCAGCCCGAGCTGCAGTCCGAGTCCGAGCCCGAGCAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACC > 7:367668/1‑148 GAGCCCGAGCAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGTTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGGTACTGGGCCTCGATGTGGGCG > 2:68187/1‑149 CCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGTTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGGTACTGGGCCTCGATGTGGGCGCGCGAGTACACGTAG < 1:68187/149‑1 AGCGCAGTCACGAAACCAGATGAACCCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTCCGGCACCCCCACCTACGGTACTGGGCCTCGATGTGGGCGCGCGAGTACACGTAGGT < 8:173650/149‑1 GCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGGTACTGGGCCTCGATGTGGGCGCGCGAGTACACGTAGGTGGG < 1:294594/149‑1 CTACGGTACTGGGCCTCGATGTGGGCGCGCGAGTACACGTAGGTGGGGGTGCCGTAACGTTCAGCAATGGCCGACAGGGCCACGCCTTCCGCGAACAGCTCACCGTCGCGGTAGTTGAAAGCGTTCATCTGGTTTCCTTACTGCGCTG > 5:311218/1‑148 CTACGGTACTGGGCCTCGATGTGGGCGCGCGAGTACACGTAGGTGGGGGTGCCGTAACGTTCAGCAATGGCCGACAGGGCCACGCCTTCCGCGAACAGCTCACCGTCGCGGTAGTTGAAAGCGTTCATCTGGTTTCCTTACTGCGCTG < 6:311218/148‑1 ACGGTACTGGGCCTCGATGTGGGCGCGCGAGTACACGTAGGTGGGGGTGCCGTAACGTTCAGCAATGGCCGACAGGGCCACGCCTTCCGCGAACAGCTCACCGTCGCGGTAGTTGAAAGCGTTCATCTGGTTTCCTTACTGCGCTGGC < 3:107998/148‑1 ACGGTACTGGGCCTCGATGTGGGCGCGCGAGTACACGTAGGTGGGGGTGCCGTAACGTTCAGCAATGGCCGACAGGGCCACGCCTTCCGCGAACAGCTCACCGTCGCGGTAGTTGAAAGCGTTCATCTGGTTTCCTTACTGCGCTGGC > 4:107998/1‑148 CGGTACTGGGCCTCGATGTGGGCGCGCGAGTACACGTAGGTGGGGGTGCCGTAACGTTCAGCAATGGCCGACAGGGCCACGCCTTCCGCGAACAGCTCACCGTCGCGGTAGTTGAAAGCGTTCATCTGGTTTCCTTACTGCGCTGGCGA > 5:78047/1‑149 GCAGCCCGAGCTGCAGTCCGAGTCCGAGCCCGAGCAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5961044‑5961195‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctacgGTACTGGGCCTCGATGTGGGCGCGCGAGTACACGTAGGTGGGGGTGCCGTAACGTTCAGCAATGGCCGACAGGGCCACGCCTTCCGCGAACAGCTCACCGTCGCGGTAGTTGAAAGCGTTCATCTGGTTTCCTTACTGCGCTGGCGA < NC_002947/5961227‑5961081 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |