New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5961195	61 (0.940)	4 (0.060)	4/254	NT	6.2%	coding (91/1248 nt)	lysA‑II	diaminopimelate decarboxylase
	?	NC_002947	= 5961227	63 (1.010)					coding (123/1248 nt)	lysA‑II	diaminopimelate decarboxylase

CCCGAGCTGCAGTCCGAGTCCGAGCCCGAGCAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACA  >  NC_002947/5961048‑5961342                                                                                                                                                    |                                                                                                                                                    cccGAGCTGCAGTCCTAGTCCGAGCCCGAGCAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGTCGGTGAGCTGTTCGCGGATGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACgt                                                                                                                                                    <  5:365730/149‑1 (MQ=255)          cAGTCCGAGTCCGAGCCCGAGCAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTcgc                                                                                                                                            <  1:207504/148‑1 (MQ=255)               cgagtccgagCCCGAGCAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGccc                                                                                                                                      <  4:164272/149‑1 (MQ=255)               cgagtccgagCCCGAGCAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGcc                                                                                                                                       <  5:343430/148‑1 (MQ=255)               cgagtccgagCCCGAGCAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGcc                                                                                                                                       >  8:314587/1‑148 (MQ=255)                   tccgagCCCGAGCAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACAt                                                                                                                                  >  4:338616/1‑149 (MQ=255)                   tccgagCCCGAGCAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACAt                                                                                                                                  <  2:372102/149‑1 (MQ=255)                     cgagcccgagcAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGATCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATc                                                                                                                                 <  4:337894/148‑1 (MQ=255)                     cgagcccgagcAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATc                                                                                                                                 >  6:270712/1‑148 (MQ=255)                     cgagcccgagcAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACAGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATc                                                                                                                                 >  1:321109/1‑148 (MQ=255)                      gagcccgagcAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGTTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGgtactgggcctcgatgtgggcg                                                                                                                               >  2:68187‑M1/1‑127 (MQ=255)                        gcccgagcAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAgg                                                                                                                             <  2:260757/149‑1 (MQ=255)                         cccgagcAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGc                                                                                                                            <  2:184595/149‑1 (MQ=255)                         cccgagcAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGc                                                                                                                            >  6:78047/1‑149 (MQ=255)                               cAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTa                                                                                                                      <  3:161179/149‑1 (MQ=255)                               cAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTa                                                                                                                      >  2:31775/1‑149 (MQ=255)                                  tCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACAt                                                                                                                                  <  4:77650/134‑1 (MQ=255)                                  tCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACAt                                                                                                                                  >  3:77650/1‑134 (MQ=255)                                  tCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACcg                                                                                                                   >  5:78047‑M2/1‑147 (MQ=255)                                    gCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACcgt                                                                                                                  <  3:107998‑M2/148‑4 (MQ=255)                                    gCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACcgt                                                                                                                  >  4:107998‑M2/1‑145 (MQ=255)                                     ccAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGTTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGgtactgggcctcgatgtgggcgcgcgagtacacgtag                                                                                                                <  1:68187‑M1/149‑38 (MQ=255)                                      cAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACcgtag                                                                                                                <  6:311218‑M2/148‑6 (MQ=255)                                      cAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACcgtag                                                                                                                >  5:311218‑M2/1‑143 (MQ=255)                                       aGCGCAGTCACGAAACCAGATGAACCCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTCCGGCACCCCCACCTACGgtactgggcctcgatgtgggcgcgcgagtacacgtaggt                                                                                                              <  8:173650‑M1/149‑40 (MQ=255)                                         cgcAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTAc                                                                                                            <  1:285103/149‑1 (MQ=255)                                          gcAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGgtactgggcctcgatgtgggcgcgcgagtacacgtaggtggg                                                                                                           <  1:294594‑M1/149‑43 (MQ=255)                                           cAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACg                                                                                                           >  8:290826/1‑148 (MQ=255)                                             gTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGAGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACg                                                                                                           >  4:171621/1‑146 (MQ=255)                                              tAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACCACGAGGCCCAGTACAGTAGCTACGCAGa                                                                                                       >  8:357326/1‑149 (MQ=255)                                                aGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACg                                                                                                     >  7:94791/1‑149 (MQ=255)                                                  gAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGcc                                                                                                   <  1:162212/149‑1 (MQ=255)                                                      ccAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGt                                                                                                                       >  2:318650/1‑125 (MQ=255)                                                        aGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCaa                                                                                             <  7:314587/149‑1 (MQ=255)                                                        aGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCaa                                                                                             <  3:171621/149‑1 (MQ=255)                                                        aGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTAGCTGAAGGCTTTGCCCTGTCTGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACTTAGAGGCCCAGTACCGTTGCTACGCAGACGCCCTGCaa                                                                                             <  2:321109/149‑1 (MQ=255)                                                                  tttCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAg                                                                                    >  5:369685/1‑148 (MQ=255)                                                                       aCTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTg                                                                              <  5:270712/149‑1 (MQ=255)                                                                        cTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACACCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTgg                                                                             >  5:132656/1‑149 (MQ=255)                                                                            cgcgACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGtgtg                                                                         >  5:161549/1‑149 (MQ=255)                                                                            cgcgACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGtgtg                                                                         <  3:338616/149‑1 (MQ=255)                                                                               gACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCtt                                                                      <  1:31775/149‑1 (MQ=255)                                                                                  ggTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGATGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTcgc                                                                   <  8:367668/149‑1 (MQ=255)                                                                                           ttCTCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAg                                                            <  8:94791/147‑1 (MQ=255)                                                                                           ttCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAgg                                                           <  3:357047/148‑1 (MQ=255)                                                                                           ttCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGc                                                          >  3:234498/1‑149 (MQ=255)                                                                                             cgcgGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGcc                                                         <  8:191559/148‑1 (MQ=255)                                                                                             cgcgGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGcc                                                         <  7:290826/148‑1 (MQ=255)                                                                                              gcgGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCaa                                                       >  5:126285/1‑149 (MQ=255)                                                                                                ggAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCAcc                                                                                >  8:16477/1‑122 (MQ=255)                                                                                                ggAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCAcc                                                                                <  7:16477/122‑1 (MQ=255)                                                                                                   aGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGcc                                                         >  8:311817/1‑142 (MQ=255)                                                                                                   aGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGcc                                                         <  7:311817/142‑1 (MQ=255)                                                                                                    ggCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCaa                                                 >  5:318033/1‑149 (MQ=255)                                                                                                     gCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTTAAGGCCAACTCCAAc                                                >  6:2866/1‑149 (MQ=255)                                                                                                          gCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTg                                            <  6:369685/148‑1 (MQ=255)                                                                                                                tCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCt                                     >  1:409050/1‑149 (MQ=255)                                                                                                                  ggCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTg                                    >  7:229159/1‑148 (MQ=255)                                                                                                                    ccATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTTAAGGCCAACTCCAACCTTGGCGTGCTGAAc                                 <  5:2866/149‑1 (MQ=255)                                                                                                                    ccATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTg                                            <  5:139889/138‑1 (MQ=255)                                                                                                                    ccATTGATGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTg                                            >  6:139889/1‑138 (MQ=255)                                                                                                                                 ttACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGcc                    >  5:108369/1‑149 (MQ=255)                                                                                                                                  tACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCt                   >  2:350783/1‑149 (MQ=255)                                                                                                                                    cGGCACCCCCACCTACGTGTACTCGCGCGCACACATCGAGGCCCATTAACGTAGCTACGAAGACGACCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTAAAGTCCAACTCCAACCTTGGCGTTCTTAAATTGCTGGCGCGACTgt                 >  8:328126/1‑148 (MQ=255)                                                                                                                                     ggCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCACCTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTggg                >  4:68411/1‑149 (MQ=255)                                                                                                                                     ggCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCt                                     >  3:217779/1‑128 (MQ=255)                                                                                                                                     ggCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCt                                     <  4:217779/128‑1 (MQ=255)                                                                                                                                        aCCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGgcgc             <  6:108369/149‑1 (MQ=255)                                                                                                                                          ccccACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAg           <  6:161549/149‑1 (MQ=255)                                                                                                                                           cccACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACcgtaggtgggggtgccgtaacgttcagcaatggccgacagggccacgccttccgcgaacagctcaccgtcgcggtagttgaaagcgttcatctggtttccttactgc          <  1:294594‑M2/149‑108 (MQ=255)                                                                                                                                             cACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCt        >  8:117096/1‑149 (MQ=255)                                                                                                                                              aCCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACcgtaggtgggggtgccggaacgttcagcaatggccgacagggccacgccttccgcgaacagctcaccgtcgcggtagttgaaagggttcatctggtttcgtgactgcgct       <  8:173650‑M2/149‑111 (MQ=255)                                                                                                                                               ccTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTc      <  8:229159/149‑1 (MQ=255)                                                                                                                                                cTACGgtactgggcctcgatgtgggcgcgcgagtacacgtaggtgggggtgccgtaacgttcagcaatggccgacagggccacgccttccgcgaacagctcaccgtcgcggtagttgaaagcgttcatctggtttccttactgcgctg      >  5:311218‑M1/1‑5 (MQ=255)                                                                                                                                                cTACGgtactgggcctcgatgtgggcgcgcgagtacacgtaggtgggggtgccgtaacgttcagcaatggccgacagggccacgccttccgcgaacagctcaccgtcgcggtagttgaaagcgttcatctggtttccttactgcgctg      <  6:311218‑M1/148‑144 (MQ=255)                                                                                                                                                cTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACcgtaggtgggggtgccgtaacgttcagcaatggccgacagggccacgccttccgcgaacaactcaccgtcgcggtagttgaaagcgttcatctggtttccttactgcgctgg     <  1:68187‑M2/149‑113 (MQ=255)                                                                                                                                                cTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTc      >  7:355541/1‑148 (MQ=255)                                                                                                                                                  aCGgtactgggcctcgatgtgggcgcgcgagtacacgtaggtgggggtgccgtaacgttcagcaatggccgacagggccacgccttccgcgaacagctcaccgtcgcggtagttgaaagcgttcatctggtttccttactgcgctggc    <  3:107998‑M1/148‑146 (MQ=255)                                                                                                                                                  aCGgtactgggcctcgatgtgggcgcgcgagtacacgtaggtgggggtgccgtaacgttcagcaatggccgacagggccacgccttccgcgaacagctcaccgtcgcggtagttgaaagcgttcatctggtttccttactgcgctggc    >  4:107998‑M1/1‑3 (MQ=255)                                                                                                                                                   cGgtactgggcctcgatgtgggcgcgcgagtacacgtaggtgggggtgccgtaacgttcagcaatggccgacagggccacgccttccgcgaacagctcaccgtcgcggtagttgaaagcgttcatctggtttccttactgcgctggcga  >  5:78047‑M1/1‑2 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CCCGAGCTGCAGTCCGAGTCCGAGCCCGAGCAGTCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACA  >  NC_002947/5961048‑5961342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.