New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5961195	61 (0.940)	4 (0.060)	4/254	NT	6.2%	coding (91/1248 nt)	lysA‑II	diaminopimelate decarboxylase
	?	NC_002947	= 5961227	63 (1.010)					coding (123/1248 nt)	lysA‑II	diaminopimelate decarboxylase

TCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTGTCTCCGGTGGTGAACTGGAGCGTGT  >  NC_002947/5961081‑5961370                                                                                                                                                   |                                                                                                                                                tCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACcg                                                                                                                                               >  5:78047‑M2/1‑147 (MQ=255)   gCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACcgt                                                                                                                                              >  4:107998‑M2/1‑145 (MQ=255)   gCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACcgt                                                                                                                                              <  3:107998‑M2/148‑4 (MQ=255)     cAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACcgtag                                                                                                                                            >  5:311218‑M2/1‑143 (MQ=255)     cAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACcgtag                                                                                                                                            <  6:311218‑M2/148‑6 (MQ=255)        cgcAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTAc                                                                                                                                        <  1:285103/149‑1 (MQ=255)          cAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACg                                                                                                                                       >  8:290826/1‑148 (MQ=255)            gTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGAGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACg                                                                                                                                       >  4:171621/1‑146 (MQ=255)             tAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACCACGAGGCCCAGTACAGTAGCTACGCAGa                                                                                                                                   >  8:357326/1‑149 (MQ=255)               aGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACg                                                                                                                                 >  7:94791/1‑149 (MQ=255)                 gAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGcc                                                                                                                               <  1:162212/149‑1 (MQ=255)                       aGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCaa                                                                                                                         <  7:314587/149‑1 (MQ=255)                       aGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCaa                                                                                                                         <  3:171621/149‑1 (MQ=255)                       aGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTAGCTGAAGGCTTTGCCCTGTCTGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACTTAGAGGCCCAGTACCGTTGCTACGCAGACGCCCTGCaa                                                                                                                         <  2:321109/149‑1 (MQ=255)                                 tttCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAg                                                                                                                >  5:369685/1‑148 (MQ=255)                                      aCTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTg                                                                                                          <  5:270712/149‑1 (MQ=255)                                       cTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACACCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTgg                                                                                                         >  5:132656/1‑149 (MQ=255)                                           cgcgACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGtgtg                                                                                                     >  5:161549/1‑149 (MQ=255)                                           cgcgACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGtgtg                                                                                                     <  3:338616/149‑1 (MQ=255)                                              gACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCtt                                                                                                  <  1:31775/149‑1 (MQ=255)                                                 ggTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGATGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTcgc                                                                                               <  8:367668/149‑1 (MQ=255)                                                          ttCTCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAg                                                                                        <  8:94791/147‑1 (MQ=255)                                                          ttCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAgg                                                                                       <  3:357047/148‑1 (MQ=255)                                                          ttCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGc                                                                                      >  3:234498/1‑149 (MQ=255)                                                            cgcgGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGcc                                                                                     <  8:191559/148‑1 (MQ=255)                                                            cgcgGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGcc                                                                                     <  7:290826/148‑1 (MQ=255)                                                             gcgGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCaa                                                                                   >  5:126285/1‑149 (MQ=255)                                                               ggAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCAcc                                                                                                            >  8:16477/1‑122 (MQ=255)                                                               ggAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCAcc                                                                                                            <  7:16477/122‑1 (MQ=255)                                                                  aGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGcc                                                                                     >  8:311817/1‑142 (MQ=255)                                                                  aGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGcc                                                                                     <  7:311817/142‑1 (MQ=255)                                                                   ggCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCaa                                                                             >  5:318033/1‑149 (MQ=255)                                                                    gCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTTAAGGCCAACTCCAAc                                                                            >  6:2866/1‑149 (MQ=255)                                                                         gCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTg                                                                        <  6:369685/148‑1 (MQ=255)                                                                               tCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCt                                                                 >  1:409050/1‑149 (MQ=255)                                                                                 ggCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTg                                                                >  7:229159/1‑148 (MQ=255)                                                                                   ccATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTTAAGGCCAACTCCAACCTTGGCGTGCTGAAc                                                             <  5:2866/149‑1 (MQ=255)                                                                                   ccATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTg                                                                        <  5:139889/138‑1 (MQ=255)                                                                                   ccATTGATGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTg                                                                        >  6:139889/1‑138 (MQ=255)                                                                                                ttACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGcc                                                >  5:108369/1‑149 (MQ=255)                                                                                                 tACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCt                                               >  2:350783/1‑149 (MQ=255)                                                                                                   cGGCACCCCCACCTACGTGTACTCGCGCGCACACATCGAGGCCCATTAACGTAGCTACGAAGACGACCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTAAAGTCCAACTCCAACCTTGGCGTTCTTAAATTGCTGGCGCGACTgt                                             >  8:328126/1‑148 (MQ=255)                                                                                                    ggCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCACCTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTggg                                            >  4:68411/1‑149 (MQ=255)                                                                                                    ggCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCt                                                                 <  4:217779/128‑1 (MQ=255)                                                                                                    ggCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCt                                                                 >  3:217779/1‑128 (MQ=255)                                                                                                       aCCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGgcgc                                         <  6:108369/149‑1 (MQ=255)                                                                                                         ccccACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAg                                       <  6:161549/149‑1 (MQ=255)                                                                                                          cccACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACcgtaggtgggggtgccgtaacgttcagcaatggccgacagggccacgccttccgcgaacagctcaccgtcgcggtagttgaaagcgttcatctggtttccttactgc                                      <  1:294594‑M2/149‑108 (MQ=255)                                                                                                            cACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCt                                    >  8:117096/1‑149 (MQ=255)                                                                                                             aCCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACcgtaggtgggggtgccggaacgttcagcaatggccgacagggccacgccttccgcgaacagctcaccgtcgcggtagttgaaagggttcatctggtttcgtgactgcgct                                   <  8:173650‑M2/149‑111 (MQ=255)                                                                                                              ccTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTc                                  <  8:229159/149‑1 (MQ=255)                                                                                                               cTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACcgtaggtgggggtgccgtaacgttcagcaatggccgacagggccacgccttccgcgaacaactcaccgtcgcggtagttgaaagcgttcatctggtttccttactgcgctgg                                 <  1:68187‑M2/149‑113 (MQ=255)                                                                                                               cTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTc                                  >  7:355541/1‑148 (MQ=255)                                                                                                                    tgtACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACAtt                            >  3:258237/1‑149 (MQ=255)                                                                                                                    tgtACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACAtt                            <  6:132656/149‑1 (MQ=255)                                                                                                                     gtACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTg                           >  5:408001/1‑149 (MQ=255)                                                                                                                     gtACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTg                           >  7:340013/1‑149 (MQ=255)                                                                                                                     gtACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTg                           >  1:207718/1‑149 (MQ=255)                                                                                                                         tCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTGtctc                       >  2:184875/1‑149 (MQ=255)                                                                                                                           gcgcgcCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTGTCTcc                      <  2:409050/148‑1 (MQ=255)                                                                                                                             gcgcCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTGTCTCCggt                   >  8:273652/1‑149 (MQ=255)                                                                                                                              cgcCCACATCGAGGCCCAGTACcgtaggtgggggtgccgtaacgttcagcaatggccgacagggccacgccttccgcgaacaactcaccgtcgcggtagttgaaagcgttcatctggtttccttactgcgctggcgactgctcgggctc                  >  2:68187‑M2/1‑22 (MQ=255)                                                                                                                                 ccACCTCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGTCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTGTCTCCggtgg                 <  7:328126/147‑1 (MQ=255)                                                                                                                                 ccACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGGCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTGTCTCCggtggt                >  1:127858/1‑148 (MQ=255)                                                                                                                                 ccACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTGTCTCCggtggt                >  5:341234/1‑148 (MQ=255)                                                                                                                                 ccACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTGTCTCCggtggt                >  1:389953/1‑148 (MQ=255)                                                                                                                                 ccACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTGTCTCCggtggt                >  3:90354/1‑148 (MQ=255)                                                                                                                                   acaTCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTGTCTCCGGTGGTGaa             >  4:131953/1‑149 (MQ=255)                                                                                                                                     aTCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTGTCTCCGGTGGTGAACt           <  6:408001/149‑1 (MQ=255)                                                                                                                                      tCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTGTCTCCGGTGGTGAACTg          >  6:45721/1‑149 (MQ=255)                                                                                                                                        gAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTGTCTCCGGTGGTGAACTgg         <  8:340013/148‑1 (MQ=255)                                                                                                                                         aGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTGTCTCCGGTGGTGAACTGGAg       <  2:207718/149‑1 (MQ=255)                                                                                                                                          tgCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCATGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCTACATTGTCTCCGGTGGTGAACTGGAGc      <  7:357326/148‑1 (MQ=255)                                                                                                                                             ccAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTGTCTCCGGTGGTGAACTGGAGCgtg   >  5:157146/1‑149 (MQ=255)                                                                                                                                              cAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTGTCTCCGGTGGTGAACTGGAGCgtgt  >  8:2246/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                TCGCCAGCGCAGTAAGGAAACCAGATGAACGCTTTCAACTACCGCGACGGTGAGCTGTTCGCGGAAGGCGTGGCCCTGTCGGCCATTGCTGAACGTTACGGCACCCCCACCTACGTGTACTCGCGCGCCCACATCGAGGCCCAGTACCGTAGCTACGCAGACGCCCTGCAAGGCACCGAGCACCTGGTGTGCTTCGCGGTCAAGGCCAACTCCAACCTTGGCGTGCTGAACGTGCTGGCGCGCCTGGGCGCAGGCTTCGACATTGTCTCCGGTGGTGAACTGGAGCGTGT  >  NC_002947/5961081‑5961370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.