| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5981512 = | 84 (1.290) | 3 (0.050) | 3/256 | NT | 3.8% | coding (2157/5049 nt) | PP_5242 | GAF domain‑containing sensor histidine kinase |
| ? | NC_002947 | 5981582 = | 71 (1.130) | coding (2227/5049 nt) | PP_5242 | GAF domain‑containing sensor histidine kinase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGGCGATGGCAAAGCCATGCGTGGCGCGGCTTTCCAGCGTGGCGCTGTGCTGCAGCAACTGCTCGGCGGTGTGCAGGTAACCAGCGGCCTGCTCGAAGGTGCCCGCGTCGCGTGCGCATGATGCGGCTTCGCGTAAAAGCTGCAGGAACGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5981663‑5981512‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctGGTTACCTGCACACCGCCGAGCAGTTGCTGCAGCACAGCGCCACGCTGGAAAGCCGCGCCACGCATGGCTTTGCCATCGCCTGCATGGCGACGGAGTGCGACATGCAACTGTCACGCA > NC_002947/5981582‑5981699 AGGCGATGGCAAAGCCATGCGTGGCGCGGCTTTCCAGCGTGGCGCTGTGCTGCAGCAACTGCTCGGCGGTGTGCAGGTAACCAGCGGCCTGCTCGAAGGTGCCCGCGTCGCGTGCGCATGATGCGGCTTCGCGTAAAAGCTGCAGGAAC < 8:296539/149‑1 GTAACCAGCGGCCTGCTCGAAGGTGCCCGCGTCTCGTGCGCATGATGCGGCTTCGCGTAAAAGCTGCAGGAACGCTGGTTACCTGCACACCGCCGAGCAGTTGCTGCAGCACAGCGCCACGCTGGAAAGCCGC < 7:290338/133‑1 GTAACCAGCGGCCTGCTCGAAGGTGCCCGCGTCTCGTGCGCATGATGCGGCTTCGCGTAAAAGCTGCAGGAACGCTGGTTACCTGCACACCGCCGAGCAGTTGCTGCAGCACAGCGCCACGCTGGAAAGCCGC > 8:290338/1‑133 CCAGCGGCCTGCTCGAAGGTGCCCGCGTCGCGTGCGCATGATGCGGCTTCGCGTAAAAGCTGCAGGAACGCTGGTTACCTGCACACCGCCGAGCAGTTGCTGCAGCACAGCGCCACGCTGGAAAGCCGCGCCACGCATGGCTTTGCCAT > 4:364323/1‑149 CGCTGGTTACCTGCACACCGCCGAGCAGTTGCTGCAGCACAGCGCCACGCTGGAAAGCCGCGCCACGCATGGCTTTGCCATCGCCTGCATGGCGACGGAGTGCGACATGCAACTGTCACGCA < 5:305080/122‑1 CGCTGGTTACCTGCACACCGCCGAGCAGTTGCTGCAGCACAGCGCCACGCTGGAAAGCCGCGCCACGCATGGCTTTGCCATCGCCTGCATGGCGACGGAGTGCGACATGCAACTGTCACGCA > 6:305080/1‑122 AGGCGATGGCAAAGCCATGCGTGGCGCGGCTTTCCAGCGTGGCGCTGTGCTGCAGCAACTGCTCGGCGGTGTGCAGGTAACCAGCGGCCTGCTCGAAGGTGCCCGCGTCGCGTGCGCATGATGCGGCTTCGCGTAAAAGCTGCAGGAACGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5981663‑5981512‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctGGTTACCTGCACACCGCCGAGCAGTTGCTGCAGCACAGCGCCACGCTGGAAAGCCGCGCCACGCATGGCTTTGCCATCGCCTGCATGGCGACGGAGTGCGACATGCAACTGTCACGCA > NC_002947/5981582‑5981699 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |