New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 605007473 (1.120)5 (0.080) 4/256 NT 6.5% coding (936/2109 nt) spoT bifunctional (p)ppGpp synthase/hydrolase
?NC_002947 = 6050143 73 (1.160)coding (1005/2109 nt) spoT bifunctional (p)ppGpp synthase/hydrolase

CTTCCGCATCATCGTCGACAAGGTTGACACCTGTTACCGCGTGCTCGGCGCCGTACACAACCTGTACAAGCCGCTGCCCGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6049924‑6050074
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcGATGCCGTTGTTGGCCATCTCTTCCATTTCGCGGGTGCGAATCTGGATTTCGATGGGCACGCCGTGCATGCCGAACAGGGTGGTGTGCAACGACTGGTAGCCGTTGGCCTTGGGGATCGCGATGTAATCCTTGAAGCGTCCGGGCA  <  NC_002947/6050143‑6049998
                                                                                                                                                                                                                                                                                                         
CTTCCGCATCATCGTCGACAAGGTTGACACCTGTTACCGCGTGCTCGGCGCCGTACACAACCTGTACAAGCCGCTGCCCGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCG                                                                                                                                                      <  5:142254/149‑1
 TTCCGCATCATCGTCGACAAGGTTGACACCTGTTACCGCGTGCTCGGCGCCGTACACAACCTGTACAAGCCGCTGCCCGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGG                                                                                                                                                     >  8:161128/1‑149
 TTCCGCATCATCGTCGACAAGGTTGACACCTGTTACCGCGAGCTCGGCGCCGTACACAACCTGTACAAGCCGCTGCCCGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTACACACCACCCTGTTCGG                                                                                                                                                     >  7:382609/1‑149
                         GACACCTGTTACCGCGTGCTCGGCGCCGTACACAACCTGTACAAGCCGCTGCCCGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCGAACGGCTACGAGTCGTTGCACACCACCCTGTTCGGC                                                                                                                                                    <  5:407417/126‑1
                         GACACCTGATACCGCGTGCTCGGCGCCGTACACAACCTGTACAAGCCGCTGCCCGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGTCTACCAGTCGTTGCACACCACCCTGTTCGGC                                                                                                                                                    >  6:407417/1‑126
                            ACCTGTTACCGCGTGCTCGGCGCCGTACACAACCTGTACAAGCCGCTGCCCGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGCGATGCCGTTGTTGGCCATCTCTTCCA                                                                                                                          >  7:99526/1‑149
                                                                   AAGCCGCTGCCCGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGCGATGCCGTTGTTGGCCATCTCTTCCATTTCGCGGGTGCGAATCTGGATTTCGATGGGCACGCCGT                                                                                   >  2:323865/1‑149
                                                                               GGACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGCGATGCCGTTGTTGGCCATCTCTTCCATTTCGCGGGTGCGAATCTGGATTTCGATGGGCACGCCGTGCATGCCGAACA                                                                       <  8:99526/149‑1
                                                                                GACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGCGATGCCGTTGTTGGCCATCTCTTCCATTTCGCGGGTGCGAATCTGGATTTCGATGGGCACGCCGTGCATGCCGAACAG                                                                      <  1:323865/149‑1
                                                                                GACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGCGATGCCGTTGTTGGCCATCTCTTCCATTTCGCGGGTGCGAATCTGGATTTCGATGGGCACGCCGTGCATGCCGAACAG                                                                      <  7:81939/149‑1
                                                                                                                                                    GGCGATGCCGTTGTTGGCCATCTCTTCCATTTCGCGGGTGCGAATCTGGATTTCGATGGGCACGCCGTGCATGCCGAACAGGGTGGTGTGCAACGACTGGTAGCCGTTGGCCTTGGGGATCGCGATGTAATCCTTGAAGCGTCCGGGCA  <  7:364327/149‑1
                                                                                                                                                    GGCGATGCCGTTGTTGGCCATCTCTTCCATTTCGCGGGTGCGAATCTGGATTTCGATGGGCACGCCGTGCATGCCGAACAGGGTGGTGTGCAACGACTGGTAGCCGTTGGCCTTGGGGATCGCGATGTAATCCTTGAAGCGTCCGGG    >  7:161128/1‑147
                                                                                                                                                    GGCGATGCCGTTGTTGGCCATCTCTTCCATTTCGCGGGTGCGAATCTGGATTTCGATGGACACGCCGTGCATGCCGAACAGGGTGGTGTGCAACGACTGGTAGCCGTTGGCCTTGGGGATCGCGATGTAATCCTTGAAGCGTCCGGG    >  7:126202/1‑147
                                                                                                                                                                                                                                                                                                         
CTTCCGCATCATCGTCGACAAGGTTGACACCTGTTACCGCGTGCTCGGCGCCGTACACAACCTGTACAAGCCGCTGCCCGGACGCTTCAAGGATTACATCGCGATCCCCAAGGCCAACGGCTACCAGTCGTTGCACACCACCCTGTTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6049924‑6050074
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcGATGCCGTTGTTGGCCATCTCTTCCATTTCGCGGGTGCGAATCTGGATTTCGATGGGCACGCCGTGCATGCCGAACAGGGTGGTGTGCAACGACTGGTAGCCGTTGGCCTTGGGGATCGCGATGTAATCCTTGAAGCGTCCGGGCA  <  NC_002947/6050143‑6049998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.