New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 198486	40 (0.610)	6 (0.100)	5/256	NT	15.0%	coding (3992/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 199110	29 (0.460)					coding (4616/26049 nt)	PP_0168	putative surface adhesion protein

GTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCA  >  NC_002947/198338‑198632                                                                                                                                                     |                                                                                                                                                   gtggCCAAACTGACTGCCACCCCTTCGCTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGC                                                                                                                                                    >  4:178594‑M1/1‑149 (MQ=255)   ggCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGcc                                                                                                                                                   >  5:390610/1‑148 (MQ=37)    gCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGTCGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCaa                                                                                                                                                 <  4:120155/149‑1 (MQ=37)      cAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCaa                                                                                                                                                 >  3:59473/1‑147 (MQ=37)       aaaaTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAg                                                                                                                                              >  5:327862/1‑149 (MQ=25)          ctgactgCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGcac                                                                                                                                           >  5:160559/1‑149 (MQ=34)             actgCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGcacc                                                                                                                                          <  6:390610/147‑1 (MQ=34)                 ccACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGt                                                                                                                                    >  2:177294/1‑149 (MQ=35)                 ccACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGt                                                                                                                                    >  2:217645/1‑149 (MQ=35)                  cACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGtt                                                                                                                                   <  5:246372/149‑1 (MQ=35)                   aCCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTc                                                                                                                                  >  3:220752/1‑149 (MQ=34)                     cccTTCGGTGAGAGAAGGCGGTGAGATCACCTACACCATGACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCgg                                                                                                                                <  6:173171/149‑1 (MQ=255)                      ccTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGc                                                                                                                               <  4:63347/149‑1 (MQ=34)                      ccTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGc                                                                                                                               >  3:248530/1‑149 (MQ=34)                       cTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGcc                                                                                                                              <  2:127728/149‑1 (MQ=34)                       cTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGc                                                                                                                               >  8:58367/1‑148 (MQ=34)                        ttCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCa                                                                                                                             >  5:346247/1‑149 (MQ=34)                        ttCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCa                                                                                                                             >  6:410478/1‑149 (MQ=34)                          cGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCAc                                                                                                                            <  4:248530/148‑1 (MQ=34)                           ggTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACt                                                                                                                           <  4:24705/148‑1 (MQ=34)                           ggTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACt                                                                                                                           <  1:177294/148‑1 (MQ=34)                            gTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTg                                                                                                                          >  4:300156/1‑148 (MQ=34)                               aCCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAg                                                                                                                       <  2:222419/148‑1 (MQ=34)                                    aGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGccc                                                                                                                 <  4:59473/149‑1 (MQ=34)                                       cGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCgg                                                                                                              <  7:58367/149‑1 (MQ=34)                                        ggTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGcaccac                                                                                                                                        <  6:321455/122‑1 (MQ=35)                                        ggTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGcaccac                                                                                                                                        >  5:321455/1‑122 (MQ=35)                                        ggTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGa                                                                                                             >  6:401553/1‑149 (MQ=34)                                              aTCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGt                                                                                                       <  5:401553/149‑1 (MQ=32)                                               tCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTc                                                                                                      >  2:253246/1‑149 (MQ=32)                                                 aCCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCt                                                                                                     <  1:307325/148‑1 (MQ=32)                                                   cTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTc                                                                                                      >  6:310642/1‑145 (MQ=32)                                                   cTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTc                                                                                                      <  5:310642/145‑1 (MQ=32)                                                      cacCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGt                                                                                                 <  4:73443/147‑1 (MQ=32)                                                         cATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGt                                                                                                 <  2:253040/144‑1 (MQ=32)                                                         cATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGt                                                                                                 >  1:253040/1‑144 (MQ=32)                                                          atgaCCCTGACCAACAAAGACGGTCTGCCGATAAAAAACCACTCGCAGCTGAACTTCAAGCTGACAGATGGAACTACTGTCGTCGAGGCAGCCAACAGCACCACCGGTTCGGCCACTGTACCCGCACCGGACAACGTCTATGTCGGCac                                                                                           >  5:380896/4‑149 (MQ=11)                                                          aTCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCac                                                                                           >  4:230777/1‑149 (MQ=32)                                                             aCCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCaccaa                                                                                        <  1:293556/149‑1 (MQ=32)                                                             aCCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCaccaa                                                                                        <  4:194947/149‑1 (MQ=32)                                                              cccTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGTCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCaccaac                                                                                       <  3:178594/149‑1 (MQ=14)                                                              cccTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCaccaac                                                                                       >  2:149992/1‑149 (MQ=31)                                                               ccTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCaccaac                                                                                       >  1:188507/1‑148 (MQ=11)                                                               ccTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCaccaac                                                                                       >  7:264890/1‑148 (MQ=11)                                                                                                        aGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCttgaagtacagctccgagtggttattgatcggcagaccgtctttgttggtcagcgtgatggtgtaggtgatctcgccgccttcggtgaccgacggagtggcag                                             >  8:373380‑M1/1‑46 (MQ=255)                                                                                                                ttCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCttgaagtacagctccgagtggttattgatcggcagaccgtctttgttggtcagcgtgatg                                                                                        >  8:67594‑M1/1‑38 (MQ=255)                                                                                                                  cAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCttgaagtacagctccgagtggttattgatcgtcagacagtctttgttggtcagcgtgatgttgtaggtgatatcgccgcattccgtcacccacggagtggaaataagcttggc                                   >  1:137905‑M1/1‑36 (MQ=255)                                                                                                                  cAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCttgaagtacagctccgagtggttattgatcggcagaccgtctttgttggtcagcgtgatggtgtaggtgatctcgccgccttcggtgaccgacggagtggcagtcagcttg                                     <  7:373380‑M1/147‑112 (MQ=255)                                                                                                                   aaGCTGACCGATGGCACTACTGTCGTCGTGGCAGCttgaagtacagctccgagtggttattgatcggcagaccgtctttgttggtcagcgtgatggtgtaggtgatctcgccgccttcggtgaccgactgagtg                                                 <  7:340501‑M1/134‑100 (MQ=255)                                                                                                                      cTGACCGACGGCACCACTGTCGTCGTGGCAGCttgaagtacagctccgagtggttattgatcggcagaccgtctttgttggtcagggtgatggtgtaggtgatctcaccgccttcggtcaccgaaggggtggcagtcagcttggccac                                >  2:240976‑M1/1‑32 (MQ=255)                                                                                                                                                   aGCttgaagtacagctccgagtggttattgatcggcagaccgtctttgttggtcagcgtgatggtgtaggtgatctcgccgccttcggtgaccgacggagtggcagtcagcttggccaccacctcgtcgagggtgtcggtgacatccac  <  1:331004‑M1/149‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTAGCCGCCCCGGACAACGTCTATGTCGGCACCAACCAGCCGGTGGTCAATGCCATCGACGCGGTCAGCGGCGCAGATGCATGGAAGTTCGAAAACCTGAACCTGGACAAGACCCCGGTCA  >  NC_002947/198338‑198632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.