New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 198486	40 (0.610)	6 (0.100)	5/256	NT	15.0%	coding (3992/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 199110	29 (0.460)					coding (4616/26049 nt)	PP_0168	putative surface adhesion protein

GTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTG  >  NC_002947/198965‑199169                                                                                                                                                  |                                                            gTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAgct                                                          <  1:331004‑M2/149‑4 (MQ=255)    gATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGa                                                        <  2:331004/148‑1 (MQ=255)    gATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGAc                                                       <  7:80583/149‑1 (MQ=255)    gATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGAc                                                       <  7:75086/149‑1 (MQ=255)                acCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCactac                                           <  1:141713/149‑1 (MQ=255)                  ccTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGAcc                                                      >  3:200432/1‑136 (MQ=255)                  ccTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGAcc                                                      <  4:200432/136‑1 (MQ=255)                  ccTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTg                                         <  6:40668/149‑1 (MQ=255)                  ccTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTg                                         >  4:85007/1‑149 (MQ=255)                  ccTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTg                                         >  2:248162/1‑149 (MQ=255)                  ccTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTg                                         >  1:23398/1‑149 (MQ=255)                  ccTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTg                                         >  3:328636/1‑149 (MQ=255)                   cTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTgt                                        >  5:198809/1‑149 (MQ=255)                    tCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTgtc                                       >  6:242141/1‑149 (MQ=255)                         gaGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTcgtcgt                                  >  4:66215/1‑149 (MQ=255)                               gtggCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGc                            >  4:67201/1‑149 (MQ=255)                               gtggCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGc                            >  2:30373/1‑149 (MQ=255)                               gtggCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAgctgccacgacgacagtggtgccgtcggtcag                             >  2:240976‑M2/1‑116 (MQ=255)                                  gCCAAGCTTATTTCCACTCCGTGGGTGACGGAATGCGGCGATATCACCTACAACATCACGCTGACCAACAAAGACTGTCTGACGATCAATAACCACTCGGAGCTGTACTTCAAgctgccacgacgacagtagtgccatcggtcagcttg                         >  1:137905‑M2/1‑113 (MQ=255)                                  gCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCaa                         >  3:189990/1‑149 (MQ=255)                                   ccAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAAc                        <  3:261943/149‑1 (MQ=255)                                    cAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAgctgccacgacgacagtagtgccatcggtcagcttg                         <  7:373380‑M2/147‑37 (MQ=255)                                    cAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCaa                         >  1:391646/1‑147 (MQ=255)                                    cAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACa                       <  5:242141/149‑1 (MQ=255)                                     aaGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAg                      >  6:340173/1‑149 (MQ=255)                                      aGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGc                     <  6:198809/149‑1 (MQ=255)                                         tGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGcac                   >  1:170505/1‑148 (MQ=255)                                           aCTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGcaccac                <  2:23398/149‑1 (MQ=255)                                           aCTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGcaccac                >  2:215705/1‑149 (MQ=255)                                           aCTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGcaccac                >  1:170226/1‑149 (MQ=255)                                            cTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAgctgccacgacgacagtagtgccatcggtcagcttgaagtacagct               >  8:373380‑M2/1‑103 (MQ=255)                                               ccACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGt            <  1:248162/149‑1 (MQ=38)                                                cACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACTGATGGCACTACTGTCGTCGTGGCAGCCAACAGcacc                  <  1:271626/142‑1 (MQ=38)                                                cACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGcacc                  >  2:271626/1‑142 (MQ=38)                                                cACTCAGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAgctgccacgacgacagtagtgccatcggtcagctt                          <  7:340501‑M2/134‑36 (MQ=255)                                                 aCTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATg                                                  >  2:59409/1‑109 (MQ=40)                                                 aCTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATg                                                  <  1:59409/109‑1 (MQ=40)                                                   tCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCgg        >  5:142750/1‑149 (MQ=35)                                                      gTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCa     >  6:323271/1‑149 (MQ=32)                                                         ggTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTg  >  1:59637/1‑149 (MQ=32)                                                                                       cATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAgctgccacgacgacagtagtgccatcggtcagcttgaa                       >  8:67594‑M2/1‑60 (MQ=255)                                                                                                                                                  |                                                            GTGGATGTCACCGACACCCTCGACGAGGTGGTGGCCAAGCTGACTGCCACTCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTG  >  NC_002947/198965‑199169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.