New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2954950 =	42 (0.650)	3 (0.050)	3/246	NT	6.8%	coding (173/843 nt)	PP_2587	LuxR family transcriptional regulator
	?	NC_002947	2955026 =	43 (0.710)					coding (249/843 nt)	PP_2587	LuxR family transcriptional regulator

CAATGGTTCGAGCACCAGGCCAAGGTCACCGAGGCGATCGGCCGGCCGGGCTTTGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGA  >  NC_002947/2954802‑2955094                                                                                                                                                     |                                                                                                                                                  cAATGGTTCGAGCACCAGGCCAAGGTCACCGAGGCGATCGGCCGGCCGGGCTTTGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGtt                                                                                                                                                   <  4:71769/149‑1 (MQ=255)    caggatgtagttgagttcatcctccaggtgcgagtggcggtagaacgattggtagtactcgctgacctcgaagtggtcgggtgccacttcgaacaggccgtaacaaccggattcgacctgttccacacaagcaccgtagaacgggTc                                                                                                                                                  >  6:78544‑M1/146‑147 (MQ=255)          gAGCACCAGGCCAAGGTCACCGAGGCGATCGGCCGGCCGGGCTTTGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAgg                                                                                                                                          <  8:128503/148‑1 (MQ=255)                           cACCGAGGCGATCGGCCGGCCGGGCTTTGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTgg                                                                                                                         >  4:340007/1‑148 (MQ=255)                              cGAGGCGATCGGCCGGCCGGGCTTTGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGc                                                                                                                     >  4:126950/1‑149 (MQ=255)                                  gCGATCGGCCGGCCGGGCTTTGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGa                                                                                                                 <  1:201278/149‑1 (MQ=255)                                    gATCGGCCGGCCGGGCTTTGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCGCGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAgg                                                                                                               >  2:367161/1‑149 (MQ=255)                                    gATCGGCCGGCCGGGCTTTGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAgg                                                                                                               <  4:225833/149‑1 (MQ=255)                                      tCGGCCGGCCGGGCTTTGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACa                                                                                                                                    >  1:147033/1‑126 (MQ=255)                                      tCGGCCGGCCGGGCTTTGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACa                                                                                                                                    <  2:147033/126‑1 (MQ=255)                                        ggccggccGGGCTTTGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCaa                                                                                                           <  4:373923/149‑1 (MQ=255)                                        ggccggccGGGCTTTGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCa                                                                                                            <  7:184839/148‑1 (MQ=255)                                          ccggccggGCTTTGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATg                                                                                                         >  2:194877/1‑149 (MQ=255)                                             gccggGCTTTGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCa                                                                                                      <  8:154530/149‑1 (MQ=255)                                              ccggGCTTTGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTgg                                                                                                                         >  6:48882/1‑129 (MQ=255)                                              ccggGCTTTGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTgg                                                                                                                         <  5:48882/129‑1 (MQ=255)                                                      tGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTAc                                                                                              <  3:126950/148‑1 (MQ=255)                                                      tGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTAc                                                                                              <  5:6317/148‑1 (MQ=255)                                                             aGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑ATCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCggg                                                                                      <  7:150976/149‑1 (MQ=255)                                                                cTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGgc                                                                                                                                <  2:186946/104‑1 (MQ=255)                                                                cTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGgc                                                                                                                                >  1:186946/1‑104 (MQ=255)                                                                   tttGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCt                                                                                 <  5:245533/148‑1 (MQ=255)                                                                       ctgcACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTg                                                                            >  7:231879/1‑149 (MQ=255)                                                                             tGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGAc                                                                      >  5:391177/1‑149 (MQ=255)                                                                               gtcgggtgccacttcgaacaggccgtaacaaccggattcgacctgttccacacaagcaccgtagaacgggTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGAcc                                                                     >  7:117374‑M1/71‑148 (MQ=255)                                                                               ggTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGACGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGAc                                                                      <  3:137505/147‑1 (MQ=255)                                                                                     aTCCGGCCGATCCAGGCGACCGCGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTa                                                              <  1:367161/149‑1 (MQ=255)                                                                                        cGGCCGATCCAGGCGACCACGGTGGACCTGTACCCGCACGATGGCATGCCCTGTGCACTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACg                                                            <  5:406582/148‑1 (MQ=255)                                                                                          gCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTg                                                         >  8:209084/1‑149 (MQ=255)                                                                                          gCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTg                                                         >  6:54964/1‑149 (MQ=255)                                                                                             gATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCtt                                                      <  5:54964/149‑1 (MQ=255)                                                                                                        ccACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAg                                           >  6:263950/1‑149 (MQ=255)                                                                                                         cACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCGAAGCAGGATGACAAGGCGCCATGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGCCTTCTACCTGCTCGACCCGTTCAACGGTGCTTGTGTGGAACAg                                           >  1:88413/1‑149 (MQ=255)                                                                                                          aCGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGt                                         <  3:340007/149‑1 (MQ=255)                                                                                                           cGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTc                                        <  2:88413/149‑1 (MQ=255)                                                                                                                 gattcgacctgttccacacaagcaccgtagaacgggTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTc                                                                                  <  5:395451‑M1/65‑1 (MQ=255)                                                                                                                 gattcgacctgttccacacaagcaccgtagaacgggTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTc                                                                                  >  6:395451‑M1/37‑101 (MQ=255)                                                                                                                   ctgtaccCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCgg                                >  3:357412/1‑149 (MQ=255)                                                                                                                      taccCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAAt                                    <  4:129317/142‑1 (MQ=255)                                                                                                                      taccCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAAt                                    >  3:129317/1‑142 (MQ=255)                                                                                                                      taccCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGgt                               <  2:382732/147‑1 (MQ=255)                                                                                                                      taccCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAAGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGgtt                              <  8:209271/148‑1 (MQ=255)                                                                                                                          cGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTAAGATGCTTGTGTGGAACAGGTCGAATCCGGTAGTTAc                         >  7:146686/1‑149 (MQ=255)                                                                                                                               gATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCt                    >  4:114724/1‑149 (MQ=255)                                                                                                                                 tGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGt                  <  8:231879/149‑1 (MQ=255)                                                                                                                                     aTGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCg               >  5:81595/1‑148 (MQ=255)                                                                                                                                         ccTGTGCGCTGTTCG‑AGCATGATGACAAGTCGCCCTTGCAGCCCGAGGGCAATGTCAGGCGCTACGTGTCGGGCTTCTACCTGCTCGTCCCGTTCTACTGTGCTTGTGTGGAACATGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTg          <  5:4690/149‑1 (MQ=255)                                                                                                                                                gcTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCg   >  7:30602/1‑149 (MQ=255)                                                                                                                                                gcTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCg   >  8:254490/1‑149 (MQ=255)                                                                                                                                                 cTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGa  <  1:194877/149‑1 (MQ=255)                                                                                                                                                  tGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGgtt                              >  6:178235/1‑120 (MQ=255)                                                                                                                                                  tGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGgtt                              <  5:178235/120‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CAATGGTTCGAGCACCAGGCCAAGGTCACCGAGGCGATCGGCCGGCCGGGCTTTGCCGCCAGCCTGTTTGCTGCACTGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGA  >  NC_002947/2954802‑2955094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.