New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2954950 =	42 (0.650)	3 (0.050)	3/246	NT	6.8%	coding (173/843 nt)	PP_2587	LuxR family transcriptional regulator
	?	NC_002947	2955026 =	43 (0.710)					coding (249/843 nt)	PP_2587	LuxR family transcriptional regulator

TGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGCGAGTACTACCAATCGTTCTACCGCCACTCGCACCTGGAGGATGAACTCAACTACATCCTG  >  NC_002947/2954878‑2955170                                                                                                                                                      |                                                                                                                                                 tGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGAc                                                                                                                                                  >  5:391177/1‑149 (MQ=255)   gtcgggtgccacttcgaacaggccgtaacaaccggattcgacctgttccacacaagcaccgtagaacgggTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGAcc                                                                                                                                                 >  7:117374‑M1/71‑148 (MQ=255)   ggTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGACGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGAc                                                                                                                                                  <  3:137505/147‑1 (MQ=255)         aTCCGGCCGATCCAGGCGACCGCGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTa                                                                                                                                          <  1:367161/149‑1 (MQ=255)            cGGCCGATCCAGGCGACCACGGTGGACCTGTACCCGCACGATGGCATGCCCTGTGCACTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACg                                                                                                                                        <  5:406582/148‑1 (MQ=255)              gCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTg                                                                                                                                     >  8:209084/1‑149 (MQ=255)              gCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTg                                                                                                                                     >  6:54964/1‑149 (MQ=255)                 gATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCtt                                                                                                                                  <  5:54964/149‑1 (MQ=255)                            ccACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAg                                                                                                                       >  6:263950/1‑149 (MQ=255)                             cACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCGAAGCAGGATGACAAGGCGCCATGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGCCTTCTACCTGCTCGACCCGTTCAACGGTGCTTGTGTGGAACAg                                                                                                                       >  1:88413/1‑149 (MQ=255)                              aCGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGt                                                                                                                     <  3:340007/149‑1 (MQ=255)                               cGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTc                                                                                                                    <  2:88413/149‑1 (MQ=255)                                       ctgtaccCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCgg                                                                                                            >  3:357412/1‑149 (MQ=255)                                          taccCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAAt                                                                                                                >  3:129317/1‑142 (MQ=255)                                          taccCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAAt                                                                                                                <  4:129317/142‑1 (MQ=255)                                          taccCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGgt                                                                                                           <  2:382732/147‑1 (MQ=255)                                          taccCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAAGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGgtt                                                                                                          <  8:209271/148‑1 (MQ=255)                                              cGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTAAGATGCTTGTGTGGAACAGGTCGAATCCGGTAGTTAc                                                                                                     >  7:146686/1‑149 (MQ=255)                                                   gATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCt                                                                                                >  4:114724/1‑149 (MQ=255)                                                     tGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGt                                                                                              <  8:231879/149‑1 (MQ=255)                                                         aTGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCg                                                                                           >  5:81595/1‑148 (MQ=255)                                                             ccTGTGCGCTGTTCG‑AGCATGATGACAAGTCGCCCTTGCAGCCCGAGGGCAATGTCAGGCGCTACGTGTCGGGCTTCTACCTGCTCGTCCCGTTCTACTGTGCTTGTGTGGAACATGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTg                                                                                      <  5:4690/149‑1 (MQ=255)                                                                    gcTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCg                                                                               >  8:254490/1‑149 (MQ=255)                                                                    gcTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCg                                                                               >  7:30602/1‑149 (MQ=255)                                                                     cTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGa                                                                              <  1:194877/149‑1 (MQ=255)                                                                      tGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGgtt                                                                                                          >  6:178235/1‑120 (MQ=255)                                                                      tGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGgtt                                                                                                          <  5:178235/120‑1 (MQ=255)                                                                        ggtcgagcaggtagaagcccgacaggtagcggctgacattgccctcgggctgccagggcgccttgtcatcctgctcgaCCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGAc                                                                             >  7:117374‑M2/79‑148 (MQ=255)                                                                              GCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCg                                                                      >  7:254490‑M1/1‑149 (MQ=255)                                                                               CAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGa                                                                     >  8:30602‑M1/1‑149 (MQ=255)                                                                                AGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGaa                                                                                         >  5:322833‑M1/1‑128 (MQ=255)                                                                                AGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGaa                                                                                         <  6:322833‑M1/128‑1 (MQ=255)                                                                                     gaagcccgacaggtagcggctgacattgccctcgggctgccagggcgccttgtcatcctgctcgaCCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATc                                                                                                               >  6:395451‑M2/66‑101 (MQ=255)                                                                                     gaagcccgacaggtagcggctgacattgccctcgggctgccagggcgccttgtcatcctgctcgaCCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATc                                                                                                               <  5:395451‑M2/36‑1 (MQ=255)                                                                                      aCAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGc                                                              <  6:391177/149‑1 (MQ=255)                                                                                       cAAGGGGCCATGGGAGCCCGTGTGCATTGTCAGCCGCTACCTGTCGGGCTTCTACCTTCTCGACCCGTTCTACTGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGTCACCCGACCACTTCGAGGTCAGCg                                                             <  8:146686/149‑1 (MQ=255)                                                                                       cAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGc                                                              <  6:81595/148‑1 (MQ=255)                                                                                        aaGGCGCCCTGGCAGCCCGAGTGAAATGTCAGCCGCTCCCTGTCGGGCTTCTACCTGATCGACCCGTTCTACGCTTCTTGTGTGGAAACGGTCGAATCCGGTTGTTACGCCCTGTTCGAAGATGCACCCGACCCCTTAGAGGTAAGCGa                                                            >  6:316276/1‑149 (MQ=255)                                                                                           gcgcCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGCGAGta                                                         >  3:112345/1‑149 (MQ=255)                                                                                           gcgcCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCAGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGCGAGt                                                          >  2:363158/1‑148 (MQ=255)                                                                                              cccTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGCGAGtacta                                                      >  5:164548/1‑149 (MQ=255)                                                                                                       cccGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGCGAGTACTACCAATCGt                                              >  8:239808/1‑148 (MQ=255)                                                                                                       cccGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGCGAGTACTACCAATCGt                                              >  4:56236/1‑148 (MQ=255)                                                                                                            gggCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGCGAGTACTACCAATCGTTCTAcc                                        <  4:357412/149‑1 (MQ=255)                                                                                                            gggCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGCGAGTACTACCAATCGTTCTAcc                                        >  7:146762/1‑149 (MQ=255)                                                                                                                  tGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGCGa                                                            >  1:204485/1‑123 (MQ=255)                                                                                                                  tGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGCGa                                                            <  2:204485/123‑1 (MQ=255)                                                                                                                              ccTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGCGAGTACTACCAATCGTTCTACCGCCACTCGCACCTgga                        <  5:263950/147‑1 (MQ=255)                                                                                                                                  tCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGCGAGTACTACCAATCGTTCTACCGCCACTCGCACCTGGGGGAt                    <  7:209084/147‑1 (MQ=255)                                                                                                                                  tCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGCGAGTACTACCAATCGTTCTACCGCCACTCGCACCTGGAGGAt                    <  7:239808/147‑1 (MQ=255)                                                                                                                                    ggtcTTCTACCTGCTCGACCCGTTCTAAGGTGCGTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGCGAGTACTACCAATCGTTCTACCGCCACTCGGACCTGGAGGATGaa                 <  5:316276/145‑1 (MQ=255)                                                                                                                                    gggCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATc                                                                                                               >  2:363092/1‑54 (MQ=255)                                                                                                                                    gggCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATc                                                                                                               <  1:363092/54‑1 (MQ=255)                                                                                                                                        ttCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTc                                                                       >  1:185072/1‑90 (MQ=255)                                                                                                                                        ttCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTc                                                                       <  2:185072/90‑1 (MQ=255)                                                                                                                                        ttCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGCGAGTACTACCAATCGTTCTACCGCCACTCGCACCTGGAGGATGAACTCaa            <  3:56236/149‑1 (MQ=255)                                                                                                                                                    gaCCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGCGAGTACTACCAATCGTTCTACCGCCACTCGCACCTGGAGGATGAACTCAACTACATCCTg  >  6:78544‑M2/3‑147 (MQ=255)                                                                                                                                                      |                                                                                                                                                 TGGGTGTGATCCGGCCGATCCAGGCGACCACGGTGTACCTGTACCCGCACGATGGCATGCCCTGTGCGCTGTTCG‑AGCAGGATGACAAGGCGCCCTGGCAGCCCGAGGGCAATGTCAGCCGCTACCTGTCGGGCTTCTACCTGCTCGACCCGTTCTACGGTGCTTGTGTGGAACAGGTCGAATCCGGTTGTTACGGCCTGTTCGAAGTGGCACCCGACCACTTCGAGGTCAGCGAGTACTACCAATCGTTCTACCGCCACTCGCACCTGGAGGATGAACTCAACTACATCCTG  >  NC_002947/2954878‑2955170

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.