New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3069869	44 (0.680)	4 (0.060)	4/256	NT	8.5%	coding (958/1521 nt)	aldB‑II	aldehyde dehydrogenase
	?	NC_002947	= 3069900	43 (0.680)					coding (989/1521 nt)	aldB‑II	aldehyde dehydrogenase

CTTCGAAGACATCATGCAGGCCGAGCCGGCGTTCATCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAGCTGCTCACCG  >  NC_002947/3069724‑3070016                                                                                                                                                  |                                                                                                                                                    cttcGAAGACATCATGCAGGCCGAGCCGGCGTTCATCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAg                                                                                                                                                   <  8:30439/148‑1 (MQ=255)  ttcGAAGACATCATGCAGGCCGAGCCGGCGTTCATCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGt                                                                                                                                                 >  1:79944/1‑149 (MQ=255)     gAAGACATCATGCAGGCCGAGCCGGCGTTCATCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGtga                                                                                                                                               <  3:328131/148‑1 (MQ=255)          catcatGCAGGCCGAGCCGGCGATCATCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATgaaga                                                                                                                                         <  1:136557/149‑1 (MQ=255)           atcatGCAGGCCGAGCCGGCGTTCATCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATgaag                                                                                                                                          >  4:86413/1‑147 (MQ=255)            tcatGCAGGCCGAGCCGGCGTTCATCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGaagaag                                                                                                                                       <  4:193199/149‑1 (MQ=255)                gCAGGCCGAGCCGGCGTTCATCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCg                                                                                                                                   >  7:148349/1‑149 (MQ=255)                    gCCGAGCCGGCGTTCATCGAGAAGGTTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGcgggtgatcttggcgatcttct                                                                                                                               >  6:165499‑M1/1‑127 (MQ=255)                    gCCGAGCCGGCGTTCATCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGcc                                                                                                                                 >  8:84574/1‑147 (MQ=255)                      cGAGCCGGCGTTCATCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGa                                                                                                                             <  5:197300/149‑1 (MQ=255)                         gCCGGCGTTCATCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCa                                                                                                                          <  4:248341/149‑1 (MQ=255)                            ggCGTTCATCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCTTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCAccc                                                                                                                       >  1:186648/1‑149 (MQ=255)                                ttaaTCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCgg                                                                                                                   <  2:79944/146‑1 (MQ=255)                                      gagaAGGTTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGcgggtgatcttggcgatcttcttcatcacctcggccatga                                                                                                             <  5:165499‑M1/149‑41 (MQ=255)                                               gCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGCTCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATAc                                                                                                    >  5:223796/1‑149 (MQ=255)                                                 cGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCa                                                                                                                          <  3:39147/125‑1 (MQ=255)                                                 cGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCa                                                                                                                          >  4:39147/1‑125 (MQ=255)                                                 cGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATAcc                                                                                                   >  5:412777/1‑148 (MQ=255)                                                  gAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGa                                                                                                       <  7:385377/143‑1 (MQ=255)                                                  gAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGa                                                                                                       <  7:380139/143‑1 (MQ=255)                                                  gAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGa                                                                                                       >  8:385377/1‑143 (MQ=255)                                                  gAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGa                                                                                                       >  8:380139/1‑143 (MQ=255)                                                    aGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGaaa                                                                                               >  7:297199/1‑149 (MQ=255)                                                      gCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAAc                                                                                              <  8:148349/148‑1 (MQ=255)                                                        cTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCAt                                                                                           <  2:313257/149‑1 (MQ=255)                                                              cTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCAtggtgg                                                                                      <  3:125225/148‑1 (MQ=255)                                                                ggCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATggtgggtg                                                                                   >  5:114462/1‑149 (MQ=255)                                                                 gCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCTTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGc                                                                                  <  2:186648/149‑1 (MQ=255)                                                                 gCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATggtgggtg                                                                                   <  7:84574/148‑1 (MQ=255)                                                                    ttcttcAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTTGGTGCt                                                                                 >  1:57436/1‑147 (MQ=255)                                                                             cAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGa                                                                      <  3:86413/149‑1 (MQ=255)                                                                               gggCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGcgggtgatcttggcgatcttcttcatcacctcggc                                                                                                                  <  8:185471‑M1/103‑36 (MQ=255)                                                                               gggCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGcgggtgatcttggcgatcttcttcatcacctcggc                                                                                                                  >  7:185471‑M1/1‑68 (MQ=255)                                                                                  cGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCt                                                                                                          <  2:74313/108‑1 (MQ=255)                                                                                  cGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCt                                                                                                          >  1:74313/1‑108 (MQ=255)                                                                                           cACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGAc                                                         >  3:195577/1‑148 (MQ=255)                                                                                           cACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGAc                                                         <  6:412777/148‑1 (MQ=255)                                                                                                 cccGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATcc                                                  >  4:92749/1‑149 (MQ=255)                                                                                                   cGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAg                                                                              >  6:247936/1‑119 (MQ=255)                                                                                                   cGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAg                                                                              <  5:247936/119‑1 (MQ=255)                                                                                                    gTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCa                                                                               <  7:320267/117‑1 (MQ=255)                                                                                                    gTCACGGGCGCTCATCCAGGAGTCGATCTACCAACCGTACATGGCCCAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGAAACCGAAACCATGGTCGGAGcaca                                                                               >  8:320267/1‑117 (MQ=255)                                                                                                                 aTCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAAt                                  >  8:30166/1‑149 (MQ=255)                                                                                                                       gAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCg                            >  2:293313/1‑149 (MQ=255)                                                                                                                             aTCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGggag                        >  2:398843/1‑147 (MQ=255)                                                                                                                                 aCGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGgc                  >  2:85103/1‑149 (MQ=255)                                                                                                                                  cGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGgc                  <  3:92749/148‑1 (MQ=255)                                                                                                                                     acggTTCATGGCCGAGGTGATGAAGATGATCGCGTAGATGACCGGCGGCTACCCGCTGGATTCCGATTCGATGGTGGGTGCTCAGGCGTCCGAGCTACAGTAAGACAATATCCTTTCGTACCTGGAAATTGGCCGGGAGGAGGgggcg               <  4:195577/145‑1 (MQ=255)                                                                                                                                        gTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAgc           >  4:222134/1‑149 (MQ=255)                                                                                                                                          tCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGcggccatgaacggttcgtagatcgactcctggatcagcgcccgtgacgggcaggtgcacacctcgccctggttgaagaacgccagcaccaggccttcggcaaccttctc         <  5:165499‑M2/149‑110 (MQ=255)                                                                                                                                            aTGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAgctgct       >  1:358551/1‑149 (MQ=255)                                                                                                                                               gCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGcggccatgaacggttcgtagatcgactcctggatcagcgcccgtgacgggcaggtgcacacctcgccc                                                  >  7:185471‑M2/1‑35 (MQ=255)                                                                                                                                               gCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGcggccatgaacggttcgtagatcgactcctggatcagcgcccgtgacgggcaggtgcacacctcgccc                                                  <  8:185471‑M2/103‑69 (MQ=255)                                                                                                                                                 cGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAGCTGCTCACcg  >  1:20269/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CTTCGAAGACATCATGCAGGCCGAGCCGGCGTTCATCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAGCTGCTCACCG  >  NC_002947/3069724‑3070016

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.