New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3069869	44 (0.680)	4 (0.060)	4/256	NT	8.5%	coding (958/1521 nt)	aldB‑II	aldehyde dehydrogenase
	?	NC_002947	= 3069900	43 (0.680)					coding (989/1521 nt)	aldB‑II	aldehyde dehydrogenase

TTCATCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAGCTGCTCACCGGCGGTGGTGCCGAGCGGCTGCAGGGTGACCTG  >  NC_002947/3069755‑3070048                                                                                                                                                  |                                                                                                                                                     ttaaTCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCgg                                                                                                                                                   <  2:79944/146‑1 (MQ=255)                gCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGCTCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATAc                                                                                                                                    >  5:223796/1‑149 (MQ=255)                  cGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATAcc                                                                                                                                   >  5:412777/1‑148 (MQ=255)                   gAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGa                                                                                                                                       >  8:385377/1‑143 (MQ=255)                   gAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGa                                                                                                                                       <  7:380139/143‑1 (MQ=255)                   gAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGa                                                                                                                                       <  7:385377/143‑1 (MQ=255)                   gAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGa                                                                                                                                       >  8:380139/1‑143 (MQ=255)                     aGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGaaa                                                                                                                               >  7:297199/1‑149 (MQ=255)                       gCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAAc                                                                                                                              <  8:148349/148‑1 (MQ=255)                         cTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCAt                                                                                                                           <  2:313257/149‑1 (MQ=255)                               cTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCAtggtgg                                                                                                                      <  3:125225/148‑1 (MQ=255)                                 ggCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATggtgggtg                                                                                                                   >  5:114462/1‑149 (MQ=255)                                  gCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCTTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGc                                                                                                                  <  2:186648/149‑1 (MQ=255)                                  gCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATggtgggtg                                                                                                                   <  7:84574/148‑1 (MQ=255)                                     ttcttcAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTTGGTGCt                                                                                                                 >  1:57436/1‑147 (MQ=255)                                              cAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGa                                                                                                      <  3:86413/149‑1 (MQ=255)                                                   cGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCt                                                                                                                                          >  1:74313/1‑108 (MQ=255)                                                   cGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCt                                                                                                                                          <  2:74313/108‑1 (MQ=255)                                                            cACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGAc                                                                                         >  3:195577/1‑148 (MQ=255)                                                            cACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGAc                                                                                         <  6:412777/148‑1 (MQ=255)                                                                  cccGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATcc                                                                                  >  4:92749/1‑149 (MQ=255)                                                                    cGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAg                                                                                                              <  5:247936/119‑1 (MQ=255)                                                                    cGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAg                                                                                                              >  6:247936/1‑119 (MQ=255)                                                                     gTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCa                                                                                                               <  7:320267/117‑1 (MQ=255)                                                                     gTCACGGGCGCTCATCCAGGAGTCGATCTACCAACCGTACATGGCCCAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGAAACCGAAACCATGGTCGGAGcaca                                                                                                               >  8:320267/1‑117 (MQ=255)                                                                                  aTCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAAt                                                                  >  8:30166/1‑149 (MQ=255)                                                                                        gAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCg                                                            >  2:293313/1‑149 (MQ=255)                                                                                              aTCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGggag                                                        >  2:398843/1‑147 (MQ=255)                                                                                                  aCGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGgc                                                  >  2:85103/1‑149 (MQ=255)                                                                                                   cGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGgc                                                  <  3:92749/148‑1 (MQ=255)                                                                                                      acggTTCATGGCCGAGGTGATGAAGATGATCGCGTAGATGACCGGCGGCTACCCGCTGGATTCCGATTCGATGGTGGGTGCTCAGGCGTCCGAGCTACAGTAAGACAATATCCTTTCGTACCTGGAAATTGGCCGGGAGGAGGgggcg                                               <  4:195577/145‑1 (MQ=255)                                                                                                         gTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAgc                                           >  4:222134/1‑149 (MQ=255)                                                                                                           tCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGcggccatgaacggttcgtagatcgactcctggatcagcgcccgtgacgggcaggtgcacacctcgccctggttgaagaacgccagcaccaggccttcggcaaccttctc                                         <  5:165499‑M2/149‑110 (MQ=255)                                                                                                             aTGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAgctgct                                       >  1:358551/1‑149 (MQ=255)                                                                                                                gCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGcggccatgaacggttcgtagatcgactcctggatcagcgcccgtgacgggcaggtgcacacctcgccc                                                                                  >  7:185471‑M2/1‑35 (MQ=255)                                                                                                                gCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGcggccatgaacggttcgtagatcgactcctggatcagcgcccgtgacgggcaggtgcacacctcgccc                                                                                  <  8:185471‑M2/103‑69 (MQ=255)                                                                                                                  cGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAGCTGCTCACcg                                  >  1:20269/1‑149 (MQ=255)                                                                                                                        gatgaAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCACGCAGCTGCTCACCGGCggtg                            >  8:249316/1‑149 (MQ=255)                                                                                                                           gaagaaGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGggagga                                                      <  4:182728/120‑1 (MQ=255)                                                                                                                           gaagaaGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGggagga                                                      >  3:182728/1‑120 (MQ=255)                                                                                                                           gaagaaGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAAATGCCCGGGAGGAGGGCGCGCAGCTGCTCACCGGCGgtggtg                         >  5:355182/1‑149 (MQ=255)                                                                                                                             agaagaTCGCCAAGATCACCCGcggccatgaacggttcgtagatcgactcctggatcagcgcccgtgacgggcaggtgcacacctcgccctggttgaagaacgccagcaccaggccttcggcaaccttctcgatgaacgccggctcggc                       >  6:165499‑M2/1‑22 (MQ=255)                                                                                                                              gatgaTCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAGCTGCTCACCGGCGGTGGTGcc                       >  4:372996/4‑148 (MQ=255)                                                                                                                              gaagaTCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAGCTGCTCACCGGCGGTGGTGcc                       >  2:71723/1‑148 (MQ=255)                                                                                                                                 gaTCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAGCTGCTCACCGGCGATGGTGCCGAGc                   >  2:167327/1‑149 (MQ=255)                                                                                                                                      ccAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAGCTGCTCACCGGCGGTGGTGCCGAGCGGCTg              >  1:365607/1‑149 (MQ=255)                                                                                                                                       cAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAGCTGCTCACCGGCGGTGGTGCCGAGCGGCTGc             <  2:20269/149‑1 (MQ=255)                                                                                                                                           aTCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAGCTGCTCACCGGCGGTGGTGCCGAGCGGCTGCAggg         <  8:297199/149‑1 (MQ=255)                                                                                                                                               cccGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAGCTGCTCACCGGCGGTGGTGCCGAGCGGCTGCAGGGTGAc     >  3:84173/1‑149 (MQ=255)                                                                                                                                               cccGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAGCTGCTCACCGGCGGTGGTGCCGAGCGGCTGCAGGGTGAc     >  6:26911/1‑149 (MQ=255)                                                                                                                                                  gcgGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAGCTGCTCACCGGCGGTGGTGCCGAGCGGCTGCAGGGTGACCTg  <  1:85103/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     TTCATCGAGAAGGCTGCCGAAGGCCTGGTGCTGGCGTTCTTCAACCAGGGCGAGGTGTGCACCTGCCCGTCACGGGCGCTGATCCAGGAGTCGATCTACGAACCGTTCATGGCCGAGGTGATGAAGAAGATCGCCAAGATCACCCGCGGCAACCCGCTGGATACCGAAACCATGGTGGGTGCTCAGGCGTCCGAGCAACAGTACGACAAGATCCTTTCGTACCTGGAAATTGCCCGGGAGGAGGGCGCGCAGCTGCTCACCGGCGGTGGTGCCGAGCGGCTGCAGGGTGACCTG  >  NC_002947/3069755‑3070048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.