New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3436901	38 (0.580)	3 (0.050)	3/252	NT	6.5%	coding (27/879 nt)	PP_3056	tail fiber protein
	?	NC_002947	= 3436957	50 (0.810)					coding (83/879 nt)	PP_3056	tail fiber protein

TGACTCGGGGTTATGCCCAGGCGCAGCCCGTCCCGATCCATGCAGCGGCCACCGTATCGGTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCC  >  NC_002947/3436760‑3437041                                                                                                                                              |                                                                                                                                             tgACTCGGGGTTATGCCCAGGCGCAGCCCGTCCCGATCCATGCAGCGGCCACCGTATCGGTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAg                                                                                                                                        <  7:130566/148‑1 (MQ=255)       ggggTTATGCCCAGGCGCAGCCCGTCCCGATCCATGCAGCGGCCACCGTATCGGTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGcc                                                                                                                                 >  3:154625/1‑149 (MQ=255)        gggTTATGCCCAGTCGCAGCCCGTCCCGATCCATGCAGCGGCCACCGTATCGGTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGTCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAATGCct                                                                                                                                <  2:115564/149‑1 (MQ=255)           ttATGCCCAGGCGCAGCCCGTCCCGATCCATGCAGCGGCCACCGTATCGGTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCctggc                                                                                                                             >  1:162671/1‑149 (MQ=255)                 ccAGGCGCAGCCCGTCCCGATCCATGCAGCGGCCACCGTATCGGTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGt                                                                                                                       >  2:36403/1‑149 (MQ=255)                  cAGGCGCAGCCCGTCCCGATCCATTCAGCGGCCACCGTATCGGTCGCCAATGCGCTGCATACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTc                                                                                                                      <  6:419754/149‑1 (MQ=255)                                cccGATCCATGCAGCGGCCACCGTATCGGTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTTTGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGGTGGAGTATGGGATGCCACCAg                                                                                                        >  7:159102/1‑149 (MQ=255)                                               ggCCACCGTATCGGTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGc                                                                                         >  5:384876/1‑149 (MQ=255)                                                gCCACCGTATCGGTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGcc                                                                                        <  7:14947/149‑1 (MQ=255)                                                gCCACCGTATCGGTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGcc                                                                                        <  4:203795/149‑1 (MQ=255)                                                    ccGTATCGGTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGcc                                                                                        >  4:167402/1‑145 (MQ=255)                                                           ggTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCtcggcagaaagccctgtactggtggcattccagactccagccaggcctttcttggtgatcacag                                                                              <  5:89665‑M1/148‑65 (MQ=255)                                                            gTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCAcc                                                                               >  4:28299/1‑146 (MQ=255)                                                            gTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCAcc                                                                               <  3:28299/146‑1 (MQ=255)                                                                 cAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATcgc                                                                       >  2:275637/1‑149 (MQ=255)                                                                 cAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATcgc                                                                       >  3:26902/1‑149 (MQ=255)                                                                                ccGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCggg                                                        >  1:301017/1‑149 (MQ=255)                                                                                ccGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCggg                                                        >  3:219926/1‑149 (MQ=255)                                                                                 cGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGt                                                       <  3:167402/149‑1 (MQ=255)                                                                                  gTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGt                                                       >  6:4778/1‑148 (MQ=255)                                                                                  gTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGt                                                       >  8:228550/1‑148 (MQ=255)                                                                                     tcgtcgTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTaca                                                   <  4:26902/149‑1 (MQ=255)                                                                                        tcgtGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGTCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACAccc                                                <  4:98878/149‑1 (MQ=255)                                                                                        tcgtGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCTAGATCACCCACATCGCGCTCGGTACGTCGGGTTACAccc                                                >  3:98878/1‑149 (MQ=255)                                                                                        tcgtGCGGGGTACGATGGAGGCTCTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTATCTGCCGAGATCACCCACATCGCGCTCCGTACGTCGGGTAACAccc                                                >  8:132360/1‑149 (MQ=255)                                                                                            gCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGAc                                            >  3:71564/1‑149 (MQ=255)                                                                                             cGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGAcc                                           <  1:275637/149‑1 (MQ=255)                                                                                             cGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGAc                                            <  5:248556/148‑1 (MQ=255)                                                                                               gggTACGATGGAGGCTGTTTTATGAGCACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCaa                                         >  1:218131/1‑149 (MQ=255)                                                                                                 gTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCtcggcagaaagccctgtactggtggcattccagactccagccaggcctttcttggtgatca                                                                                 >  1:167265‑M1/1‑46 (MQ=255)                                                                                                 gTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCtcggcagaaagccctgtactggtggcattccagactccagccaggcctttcttggtgatca                                                                                 <  2:167265‑M1/107‑62 (MQ=255)                                                                                                    cGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAg                                     >  8:214457/1‑148 (MQ=255)                                                                                                     gATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGc                                    >  3:87524/1‑148 (MQ=255)                                                                                                         gAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAAc                                <  2:301017/148‑1 (MQ=255)                                                                                                             cTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAATCCAGCt                           <  5:4778/149‑1 (MQ=255)                                                                                                                  ttATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTTCACCCCGACCAACGAGCAAACCAGCTTgcg                       <  1:36403/148‑1 (MQ=255)                                                                                                                      gAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGcc                   >  8:338179/1‑148 (MQ=255)                                                                                                                           ccccTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGt              <  7:338179/148‑1 (MQ=255)                                                                                                                           ccccTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTg             >  5:256204/1‑149 (MQ=255)                                                                                                                              cTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGcc          <  4:154625/149‑1 (MQ=255)                                                                                                                              cTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGc           >  6:337257/1‑148 (MQ=255)                                                                                                                                       cTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAgatcacaggttgtaaaggggtactcataaaacagcctccatcgtaccccgcacgacgatacgggtacgcagcgcattggcgacc  <  5:89665‑M2/148‑85 (MQ=255)                                                                                                                                          tgATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAgatcacaggttgtaaaggggtactcataaaacagcctccatcgtac                                        <  2:167265‑M2/107‑47 (MQ=255)                                                                                                                                          tgATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAgatcacaggttgtaaaggggtactcataaaacagcctccatcgtac                                        >  1:167265‑M2/1‑61 (MQ=255)                                                                                                                                              |                                                                                                                                             TGACTCGGGGTTATGCCCAGGCGCAGCCCGTCCCGATCCATGCAGCGGCCACCGTATCGGTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCC  >  NC_002947/3436760‑3437041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.