New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3436901	38 (0.580)	3 (0.050)	3/252	NT	6.5%	coding (27/879 nt)	PP_3056	tail fiber protein
	?	NC_002947	= 3436957	50 (0.810)					coding (83/879 nt)	PP_3056	tail fiber protein

GTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCC  >  NC_002947/3436819‑3437104                                                                                                                                           |                                                                                                                                                    gTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCAcc                                                                                                                                              <  3:28299/146‑1 (MQ=255) gTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCAcc                                                                                                                                              >  4:28299/1‑146 (MQ=255)      cAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATcgc                                                                                                                                      >  2:275637/1‑149 (MQ=255)      cAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATcgc                                                                                                                                      >  3:26902/1‑149 (MQ=255)                     ccGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCggg                                                                                                                       >  1:301017/1‑149 (MQ=255)                     ccGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCggg                                                                                                                       >  3:219926/1‑149 (MQ=255)                      cGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGt                                                                                                                      <  3:167402/149‑1 (MQ=255)                       gTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGt                                                                                                                      >  8:228550/1‑148 (MQ=255)                       gTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGt                                                                                                                      >  6:4778/1‑148 (MQ=255)                          tcgtcgTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTaca                                                                                                                  <  4:26902/149‑1 (MQ=255)                             tcgtGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGTCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACAccc                                                                                                               <  4:98878/149‑1 (MQ=255)                             tcgtGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCTAGATCACCCACATCGCGCTCGGTACGTCGGGTTACAccc                                                                                                               >  3:98878/1‑149 (MQ=255)                             tcgtGCGGGGTACGATGGAGGCTCTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTATCTGCCGAGATCACCCACATCGCGCTCCGTACGTCGGGTAACAccc                                                                                                               >  8:132360/1‑149 (MQ=255)                                 gCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGAc                                                                                                           >  3:71564/1‑149 (MQ=255)                                  cGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGAcc                                                                                                          <  1:275637/149‑1 (MQ=255)                                  cGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGAc                                                                                                           <  5:248556/148‑1 (MQ=255)                                    gggTACGATGGAGGCTGTTTTATGAGCACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCaa                                                                                                        >  1:218131/1‑149 (MQ=255)                                         cGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAg                                                                                                    >  8:214457/1‑148 (MQ=255)                                          gATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGc                                                                                                   >  3:87524/1‑148 (MQ=255)                                              gAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAAc                                                                                               <  2:301017/148‑1 (MQ=255)                                                  cTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAATCCAGCt                                                                                          <  5:4778/149‑1 (MQ=255)                                                       ttATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTTCACCCCGACCAACGAGCAAACCAGCTTgcg                                                                                      <  1:36403/148‑1 (MQ=255)                                                           gAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGcc                                                                                  >  8:338179/1‑148 (MQ=255)                                                                ccccTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGt                                                                             <  7:338179/148‑1 (MQ=255)                                                                ccccTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTg                                                                            >  5:256204/1‑149 (MQ=255)                                                                   cTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGcc                                                                         <  4:154625/149‑1 (MQ=255)                                                                   cTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGc                                                                          >  6:337257/1‑148 (MQ=255)                                                                            cTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAgatcacaggttgtaaaggggtactcataaaacagcctccatcgtaccccgcacgacgatacgggtacgcagcgcattggcgacc                                                                 <  5:89665‑M2/148‑85 (MQ=255)                                                                               tgATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAgatcacaggttgtaaaggggtactcataaaacagcctccatcgtac                                                                                                       <  2:167265‑M2/107‑47 (MQ=255)                                                                               tgATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAgatcacaggttgtaaaggggtactcataaaacagcctccatcgtac                                                                                                       >  1:167265‑M2/1‑61 (MQ=255)                                                                                    aCCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTgg                                                        >  3:220246/1‑149 (MQ=255)                                                                                      cAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCg                                                      >  3:106399/1‑149 (MQ=255)                                                                                            aGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGc                                                <  7:228550/149‑1 (MQ=255)                                                                                                ctggctggAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCt                                            <  4:219926/149‑1 (MQ=255)                                                                                                ctggctggAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTAGCGCGCCCAGGTGGCCAAGTATc                                                                  >  8:194968/1‑127 (MQ=255)                                                                                                ctggctggAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTAGCGCGCCCAGGTGGCCAAGTATc                                                                  <  7:194968/127‑1 (MQ=255)                                                                                                 tggctggAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCt                                            >  6:280912/1‑148 (MQ=255)                                                                                                   gctggAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTTCACCCCGACCAACGAGCAAACCAGCTTGCGGGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTgt                                          <  7:132360/148‑2 (MQ=255)                                                                                                   gctggAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAAc                                                                                                       >  2:263882/1‑87 (MQ=255)                                                                                                   gctggAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAAc                                                                                                       <  1:263882/87‑1 (MQ=255)                                                                                                   gctggAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGa                                          <  6:256204/148‑1 (MQ=255)                                                                                                   gctggAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAg                                         >  3:322810/1‑149 (MQ=255)                                                                                                     tggAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCg                                                      <  6:155285/134‑1 (MQ=255)                                                                                                     tggAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCg                                                      >  5:155285/1‑134 (MQ=255)                                                                                                      ggAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGa                                      <  7:214457/149‑1 (MQ=255)                                                                                                             ggAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCt                                >  6:393618/1‑148 (MQ=255)                                                                                                             ggAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCt                                >  6:203308/1‑148 (MQ=255)                                                                                                              gAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGa                              >  7:204696/1‑149 (MQ=255)                                                                                                              gAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGa                              >  7:263941/1‑149 (MQ=255)                                                                                                                   ccaccaGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATtcac                         <  8:204696/149‑1 (MQ=255)                                                                                                                     accaGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGCCAGCCTGATtcacct                       >  8:100773/1‑149 (MQ=255)                                                                                                                      ccaGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATtcacctc                      >  2:66216/1‑149 (MQ=255)                                                                                                                             aGGGCTTTCTGCCGAGATCACCCATATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCACCTTGCGCGCCCAGGTGGCCAAGTAAACCATTGATGGCGGTGAGCGCCAGAGTTACAGCCTTAATAACCACACCGcc                >  7:56101/1‑148 (MQ=255)                                                                                                                             aGGGCTTTCTGCCGAGATCACCCACATAGCGCTCGGTACGTCGGGTTACACCCCGACAAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCa               >  5:287396/1‑149 (MQ=255)                                                                                                                                     cTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGa        <  5:203308/148‑1 (MQ=255)                                                                                                                                        ccGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGAt       <  4:87524/146‑1 (MQ=255)                                                                                                                                        ccGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGAt       <  4:71564/146‑1 (MQ=255)                                                                                                                                          gagaTCAACCACATTGTGTTCTGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGccc  <  8:56101/149‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                    GTCGCCAATGCGCTGCGTACCCGTATCGTCGTGCGGGGTACGATGGAGGCTGTTTTATGAGTACCCCTTTACAACCTGTGATCACCAAGAAAGGCCTGGCTGGAGTCTGGAATGCCACCAGTACAGGGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCC  >  NC_002947/3436819‑3437104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.