New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3507486	38 (0.580)	4 (0.070)	4/244	NT	10.1%	coding (804/969 nt)	PP_3104	hypothetical protein
	?	NC_002947	= 3507509	36 (0.600)					coding (827/969 nt)	PP_3104	hypothetical protein

GTACAGCAGCCGTGGCGTAGGCAAAGTACTGACGGGGGCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTGGGCACTACCCTGGGTAATTTC  >  NC_002947/3507339‑3507633                                                                                                                                                     |                                                                                                                                                    gTACAGCAGCCGTGGCGTAGGCAAAGTACTGACGGGGGCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑Tg                                                                                                                                                    <  2:299711/149‑1 (MQ=255)     agcagcCGTGGCGTAGGCAAAGTACTGACGGGGGCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCAtt                                                                                                                                                >  1:405881/1‑149 (MQ=255)      gcagcCGTGGCGTAGGCAAAGTACTGACGGGGGCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTg                                                                                                                                               <  3:323087/149‑1 (MQ=255)       cagcCGTGGCGTAGGCAAAGTACTGACGGGGGCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTGTCGGAGTTATTCCAGAAGTAAGATTACACCCAGCCGACCAA‑TGCATTgg                                                                                                                                              >  2:338126/1‑149 (MQ=255)       cagcCGTGGCGTAGGCAAAGTACTGACGGGGGCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTgg                                                                                                                                              >  2:109383/1‑149 (MQ=255)             tgccGTAGGAAATTTAGTGAGGGGGCCAAAATTAGGCGGCGATTTGGCTTTCGGCCCCCAGGCTTACCTTTATGCTAGGGAGGAAAAAAGCGTGTCGTCGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTg                                                                                                                                        <  1:99663/146‑1 (MQ=255)             tGGCGTATGCAAAGTAGTGACGGGGGCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGTCAAAAAGCGTCTCTGAGTTCTTCCAGAAGTCAGCTTACACCCTGCCGTCCAA‑TGCATTGGCCTTTg                                                                                                                                        <  2:366800/149‑1 (MQ=255)                     gCAAAGTACTGACGGGGGCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGgt                                                                                                                                >  3:268517/1‑149 (MQ=255)                     gCAAAGTACTGACGGGGGCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGgt                                                                                                                                <  4:133962/149‑1 (MQ=255)                     gCAAAGTACTGACGGGGGCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGgt                                                                                                                                <  2:232940/149‑1 (MQ=255)                                aCGGGGGCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTAGCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAC‑TGCATTGGCCTTTGGTGTCGGTGTattggtcgg                                                                                                                     >  6:66943‑M2/1‑140 (MQ=255)                                   ggggCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTcggcgg                                                                                                                  <  2:405881/149‑1 (MQ=255)                                     ggCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGc                                                                                                                <  5:352027/149‑1 (MQ=255)                                        cAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑Tacaccgacaccaaaggccaatgcattggtcgg                                                                                                                     <  3:235979‑M1/141‑33 (MQ=255)                                        cAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑Tacaccgacaccaaaggccaatgcattggtcgg                                                                                                                     >  4:235979‑M1/1‑109 (MQ=255)                                        cAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGa                                                                                                             >  1:191706/1‑149 (MQ=255)                                                   gcgcATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑Tacaccgacaccaaaggccaatgcattggtcg                                                                                                                      >  5:35244‑M1/1‑98 (MQ=255)                                                   gcgcATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑Tacaccgacaccaaaggccaatgcattggtcg                                                                                                                      <  6:35244‑M1/129‑32 (MQ=255)                                                   gcgcATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGc                                                                                                   >  7:380626/1‑148 (MQ=255)                                                           gCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGt                                                                                          >  3:164334/1‑149 (MQ=255)                                                            cGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGGCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAATTGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGt                                                                                          <  1:115622/149‑1 (MQ=255)                                                             gTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGa                                                                                        <  4:268517/149‑1 (MQ=255)                                                                    ccccAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGAGATTTCCtt                                                                                 >  6:237359/1‑149 (MQ=255)                                                                    cccaAGGCTTACCTAGATGCGAAGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCGACCCGACGAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGTCAGGGCCGGCTATAGTCGTGATTGCCtt                                                                                 <  5:237359/149‑1 (MQ=255)                                                                       cAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTc                                                                              <  1:109383/149‑1 (MQ=255)                                                                          gCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCttt                                                                           <  8:380626/149‑1 (MQ=255)                                                                              aCCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGcc                                                                                   >  5:213604/1‑137 (MQ=255)                                                                              aCCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGcc                                                                                   <  6:213604/137‑1 (MQ=255)                                                                                cTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCtata                                                                                               >  1:213652/1‑123 (MQ=255)                                                                                cTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCtata                                                                                               <  2:213652/123‑1 (MQ=255)                                                                                   gATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGc                                                                     >  6:412305/1‑146 (MQ=255)                                                                                   gATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGc                                                                     <  5:412305/146‑1 (MQ=255)                                                                                       cGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTg                                                              >  8:307047/1‑149 (MQ=255)                                                                                                cAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGcagttcag                                                     <  7:376922/149‑1 (MQ=255)                                                                                                 aaaaaGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGcagttcagt                                                    >  3:326918/1‑149 (MQ=255)                                                                                                           tcGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGac                                          >  6:297302/1‑148 (MQ=255)                                                                                                               aGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGAc                                      >  1:70157/1‑149 (MQ=255)                                                                                                                   cttcCAGAAGTCAGCTTACACCCAGCCGACCAT‑TGCATTGGCCTTTGGTGTCGTTTTATTGTTCGGAGGGCTGACAGGGCCGGCTATAGTAGTGATTGCCTTCTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGAt                                   <  1:289627/148‑1 (MQ=255)                                                                                                                         gAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCgg                            >  6:150160/1‑149 (MQ=255)                                                                                                                               aGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTgg                      >  1:401715/1‑149 (MQ=255)                                                                                                                                gCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTg                       <  5:229138/147‑1 (MQ=255)                                                                                                                                gCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTg                       >  6:229138/1‑147 (MQ=255)                                                                                                                                    acacCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGGTCAGTTTGTAATGAGTGACGATTTTTCGGGGCTGGGCAc                  >  4:49692/1‑148 (MQ=255)                                                                                                                                     cacCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTGGGc                    <  2:273088/145‑1 (MQ=255)                                                                                                                                     cacCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTGGGc                    >  1:273088/1‑145 (MQ=255)                                                                                                                                            ccGACCAA‑Tacaccgacaccaaaggccaatgcagtggtcggctgggtgtaagctgacttctggaagaactccgagacgctttttgcctccgtcgcatctagctaagcctgggggccgaacgccaatgcgccgcctaatttggcccccgt         >  6:66943‑M1/1‑9 (MQ=255)                                                                                                                                            ccGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTattggtcggctgggtgtaagctgacttctggaagaactccgagacgctttttgcctccgtcgcatctaggtaagcctgggggccgaacgccaatgcgccgcctaatttg                 >  4:235979‑M2/1‑32 (MQ=255)                                                                                                                                            ccGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTattggtcggctgggtgtaagctgacttctggaagaactccgagacgctttttgcctccgtcgcatctaggtaagcctgggggccgaacgccaatgcgccgcctaatttg                 <  3:235979‑M2/141‑110 (MQ=255)                                                                                                                                             cGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTattggtcggctgggtgtaagctgacttctggaagaactccgagacgctttttgcctccgtcgcatctaggtaagcctgggggccgaacgccaatgcgc                            <  6:35244‑M2/129‑99 (MQ=255)                                                                                                                                             cGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTattggtcggctgggtgtaagctgacttctggaagaactccgagacgctttttgcctccgtcgcatctaggtaagcctgggggccgaacgccaatgcgc                            >  5:35244‑M2/1‑31 (MQ=255)                                                                                                                                                 cAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTGGGCACTACCCTGGGTAAtt    >  3:286845/1‑149 (MQ=255)                                                                                                                                                 cAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTGGGCACTACCCGGGGTAAtt    >  2:221762/1‑149 (MQ=255)                                                                                                                                                   a‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTAAGTTTGTCATGAGTGACGAATTTTAAGGGCTGGGCACTAACCTGGTTAAatta  >  4:400240/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GTACAGCAGCCGTGGCGTAGGCAAAGTACTGACGGGGGCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTGGGCACTACCCTGGGTAATTTC  >  NC_002947/3507339‑3507633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.