New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3507486	38 (0.580)	4 (0.070)	4/244	NT	10.1%	coding (804/969 nt)	PP_3104	hypothetical protein
	?	NC_002947	= 3507509	36 (0.600)					coding (827/969 nt)	PP_3104	hypothetical protein

ACGGGGGCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTGGGCACTACCCTGGGTAATTTCTTGACGGGGAAGGATTAAA  >  NC_002947/3507370‑3507652                                                                                                                                             |                                                                                                                                                aCGGGGGCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTAGCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAC‑TGCATTGGCCTTTGGTGTCGGTGTattggtcgg                                                                                                                                        >  6:66943‑M2/1‑140 (MQ=255)    ggggCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTcggcgg                                                                                                                                     <  2:405881/149‑1 (MQ=255)      ggCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGc                                                                                                                                   <  5:352027/149‑1 (MQ=255)         cAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGa                                                                                                                                >  1:191706/1‑149 (MQ=255)                    gcgcATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGc                                                                                                                      >  7:380626/1‑148 (MQ=255)                            gCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGt                                                                                                             >  3:164334/1‑149 (MQ=255)                             cGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGGCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAATTGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGt                                                                                                             <  1:115622/149‑1 (MQ=255)                              gTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGa                                                                                                           <  4:268517/149‑1 (MQ=255)                                     ccccAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGAGATTTCCtt                                                                                                    >  6:237359/1‑149 (MQ=255)                                     cccaAGGCTTACCTAGATGCGAAGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCGACCCGACGAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGTCAGGGCCGGCTATAGTCGTGATTGCCtt                                                                                                    <  5:237359/149‑1 (MQ=255)                                        cAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTc                                                                                                 <  1:109383/149‑1 (MQ=255)                                           gCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCttt                                                                                              <  8:380626/149‑1 (MQ=255)                                               aCCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGcc                                                                                                      <  6:213604/137‑1 (MQ=255)                                               aCCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGcc                                                                                                      >  5:213604/1‑137 (MQ=255)                                                 cTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCtata                                                                                                                  >  1:213652/1‑123 (MQ=255)                                                 cTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCtata                                                                                                                  <  2:213652/123‑1 (MQ=255)                                                    gATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGc                                                                                        >  6:412305/1‑146 (MQ=255)                                                    gATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGc                                                                                        <  5:412305/146‑1 (MQ=255)                                                        cGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTg                                                                                 >  8:307047/1‑149 (MQ=255)                                                                 cAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGcagttcag                                                                        <  7:376922/149‑1 (MQ=255)                                                                  aaaaaGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGcagttcagt                                                                       >  3:326918/1‑149 (MQ=255)                                                                            tcGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGac                                                             >  6:297302/1‑148 (MQ=255)                                                                                aGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGAc                                                         >  1:70157/1‑149 (MQ=255)                                                                                    cttcCAGAAGTCAGCTTACACCCAGCCGACCAT‑TGCATTGGCCTTTGGTGTCGTTTTATTGTTCGGAGGGCTGACAGGGCCGGCTATAGTAGTGATTGCCTTCTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGAt                                                      <  1:289627/148‑1 (MQ=255)                                                                                          gAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCgg                                               >  6:150160/1‑149 (MQ=255)                                                                                                aGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTgg                                         >  1:401715/1‑149 (MQ=255)                                                                                                 gCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTg                                          <  5:229138/147‑1 (MQ=255)                                                                                                 gCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTg                                          >  6:229138/1‑147 (MQ=255)                                                                                                     acacCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGGTCAGTTTGTAATGAGTGACGATTTTTCGGGGCTGGGCAc                                     >  4:49692/1‑148 (MQ=255)                                                                                                      cacCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTGGGc                                       <  2:273088/145‑1 (MQ=255)                                                                                                      cacCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTGGGc                                       >  1:273088/1‑145 (MQ=255)                                                                                                             ccGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTattggtcggctgggtgtaagctgacttctggaagaactccgagacgctttttgcctccgtcgcatctaggtaagcctgggggccgaacgccaatgcgccgcctaatttg                                    <  3:235979‑M2/141‑110 (MQ=255)                                                                                                             ccGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTattggtcggctgggtgtaagctgacttctggaagaactccgagacgctttttgcctccgtcgcatctaggtaagcctgggggccgaacgccaatgcgccgcctaatttg                                    >  4:235979‑M2/1‑32 (MQ=255)                                                                                                              cGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTattggtcggctgggtgtaagctgacttctggaagaactccgagacgctttttgcctccgtcgcatctaggtaagcctgggggccgaacgccaatgcgc                                               >  5:35244‑M2/1‑31 (MQ=255)                                                                                                              cGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTattggtcggctgggtgtaagctgacttctggaagaactccgagacgctttttgcctccgtcgcatctaggtaagcctgggggccgaacgccaatgcgc                                               <  6:35244‑M2/129‑99 (MQ=255)                                                                                                                  cAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTGGGCACTACCCTGGGTAAtt                       >  3:286845/1‑149 (MQ=255)                                                                                                                  cAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTGGGCACTACCCGGGGTAAtt                       >  2:221762/1‑149 (MQ=255)                                                                                                                    a‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTAAGTTTGTCATGAGTGACGAATTTTAAGGGCTGGGCACTAACCTGGTTAAatta                     >  4:400240/1‑148 (MQ=255)                                                                                                                        cATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTGGGCACTACCCTGGGTAATTTCtt                   <  4:326918/148‑1 (MQ=255)                                                                                                                        cATTGGCCTATGGTGTCGGAGTATTGGGCGGCGGGCTGACATGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTTCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTGGGCACTACCCTGGGTAATTTCTTg                  <  1:338126/149‑1 (MQ=255)                                                                                                                         aTTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTGGGCACTACCCTGGGTAATTTCTTGa                 >  3:304576/1‑149 (MQ=255)                                                                                                                                     tgtCGGGGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTGGTTGGGTGCGGGCGTGGCAGTTCAGTTTGGGAAGCCTGACGAGTTTTCGGGGCGGGGCCCTACCCTGGGTAATTTGGTGACGGGGAAGGAt      >  4:74330/1‑148 (MQ=255)                                                                                                                                        cGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTGGGCACTACCCTGGGTAATTTCTTGACGGGGAAGGATTaaa  <  4:304576/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                ACGGGGGCCAAATTAGGCGGCGCATTGGCGTTCGGCCCCCAGGCTTACCTAGATGCGACGGAGGCAAAAAGCGTCTCGGAGTTCTTCCAGAAGTCAGCTTACACCCAGCCGACCAA‑TGCATTGGCCTTTGGTGTCGGTGTATTGGTCGGCGGGCTGACAGGGCCGGCTATAGTCGTGATTGCCTTGTCTTTGGGTGCGGGCTTGGCAGTTCAGTTTGTCATGAGTGACGATTTTTCGGGGCTGGGCACTACCCTGGGTAATTTCTTGACGGGGAAGGATTAAA  >  NC_002947/3507370‑3507652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.