New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3857801 =	44 (0.680)	3 (0.050)	3/254	NT	7.2%	intergenic (+35/‑259)	PP_mr41/cbtA	Cobalamin regulatory region/cobalt transporter subunit A
	?	NC_002947	3857832 =	35 (0.560)					intergenic (+66/‑228)	PP_mr41/cbtA	Cobalamin regulatory region/cobalt transporter subunit A

AGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTCAGCCAGCGTGTAACCATCGCCGTCGGTGCCAGCT  >  NC_002947/3857653‑3857946                                                                                                                                                     |                                                                                                                                                  aGCGAGTGAAGCGTCGGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCGTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTgg                                                                                                                                                   <  3:286815/149‑1 (MQ=255)  gCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTggg                                                                                                                                                  >  7:47272/1‑149 (MQ=255)  cccggcaaagtagaccaggcacagacccagcaagctggcaccgacggcgatggttacacgctggctgagcgtaacgggggtagcaaggctgtgttgtttggcgctggtgacgggcatgacgcgatcctctgctttttgtgggcaatagg                                                                                                                                                  <  3:19576‑M1/2‑1 (MQ=255)   ccggcaaagtagaccaggcacagacccagcaagctggcaccgacggcgatggttacacgctggctgagcgtaacgggggtagcaaggctgtgttgtttggcgctggtgacgggcatcacgcgatcatcttctttttgagtgaaatagcc                                                                                                                                                 <  6:283915‑M1/3‑3 (MQ=255)     ggcaaagtagaccaggcacagacccagcaagctggcaccgacggcgatggttacacgctggctgagcgtaacgggggtagcaaggctgtgttgtttggcgctggtgacgggcatgacgcgatcctctgctttttgtgggcaataGGc                                                                                                                                                 <  8:318072‑M1/3‑1 (MQ=255)     aGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGa                                                                                                                                               >  2:81627/1‑149 (MQ=255)      gTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGAc                                                                                                                                              <  6:57211/149‑1 (MQ=255)            cGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTc                                                                                                                                        <  2:231642/149‑1 (MQ=255)             gTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTcc                                                                                                                                       <  7:385738/149‑1 (MQ=255)              tCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCg                                                                                                                                      >  2:31675/1‑149 (MQ=255)                  tACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCTGTGGGCGTGCGCTGTTGCATTCCCTTGGGCGACCACGTCCgggg                                                                                                                                   <  6:345197/148‑1 (MQ=255)                    ccACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTg                                                                                                                                <  2:47138/149‑1 (MQ=255)                       cTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCcg                                                                                                                             >  1:295776/1‑149 (MQ=255)                                   gtaCGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTAtt                                                                                                                 <  2:295776/149‑1 (MQ=255)                                      cGGGATGGGATGGGGATGCGTTCCTGGATCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTTGCTTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACGACGTCCGGGGCTGCCGCGCTCGCCTATTGcc                                                                                                              <  6:83806/149‑1 (MQ=255)                                       ggCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGccc                                                                                                             <  1:81627/149‑1 (MQ=255)                                       gcaccgacggcgatggttacacgctggctgagcgtaacgggggtagcaaggctgtgttgtttggcgctggtgacgggcatgacgcgatcctctgctttttgtgggcaataGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGc                                                                                                               >  2:798‑M1/111‑147 (MQ=255)                                        gCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCca                                                                                                            >  7:238619/1‑149 (MQ=255)                                                aGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGc                                                                                                    <  8:238619/149‑1 (MQ=255)                                                     aCGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCgg                                                                                                                                     <  6:403328/111‑1 (MQ=255)                                                     aCGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCgg                                                                                                                                     >  5:403328/1‑111 (MQ=255)                                                              aGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCa                                                                                      <  8:47272/149‑1 (MQ=255)                                                                gAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAACCAGAGGATCGCGTCATg                                                                                    >  4:288002/1‑149 (MQ=255)                                                                   tgagcgtaacgggggtagcaaggctgtgttgtttggcgctggtgacgggcatgacgcgatcctctgctttttgtgggcaataGGCGACCACGTCCGGGGCTGCCGCGCTCGc                                                                                                                      >  8:258538‑M1/83‑112 (MQ=255)                                                                   tgagcgtaacgggggtagcaaggctgtgttgtttggcgctggtgacgggcatgacgcgatcctctgctttttgtgggcaataGGCGACCACGTCCGGGGCTGCCGCGCTCGc                                                                                                                      <  7:258538‑M1/30‑1 (MQ=255)                                                                    ccAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTcc                                                                                                                                       <  8:323100/94‑1 (MQ=255)                                                                    ccAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTcc                                                                                                                                       >  7:323100/1‑94 (MQ=255)                                                                      aGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATcgc                                                                                          >  8:147839/1‑137 (MQ=255)                                                                      aGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATcgc                                                                                          <  7:147839/137‑1 (MQ=255)                                                                           ttCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGGACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGt                                                                               <  8:117035/143‑1 (MQ=255)                                                                           ttCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGGACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGt                                                                               >  7:117035/1‑143 (MQ=255)                                                                               tCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGAcc                                                                                                                                             <  1:160860/77‑1 (MQ=255)                                                                               tCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGAcc                                                                                                                                             >  2:160860/1‑77 (MQ=255)                                                                               tCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAgcgc                                                                      >  5:356636/1‑148 (MQ=255)                                                                               tCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAgcgc                                                                      >  6:153723/1‑148 (MQ=255)                                                                                 gCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCa                                                                    >  1:347348/1‑148 (MQ=255)                                                                                       ccGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAacaaca                                                             <  1:31675/149‑1 (MQ=255)                                                                                       ccGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAacaaca                                                             >  5:90900/1‑149 (MQ=255)                                                                                         ggAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAAcaca                                                           <  5:28703/149‑1 (MQ=255)                                                                                               cGGCCTGGCGTTCATGAACACCCCGCTGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTg                                                     <  3:288002/149‑1 (MQ=255)                                                                                                 gCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGccc                                                                                 <  7:312242/119‑1 (MQ=255)                                                                                                 gCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGccc                                                                                 >  8:312242/1‑119 (MQ=255)                                                                                                   cTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTAc                                                 <  6:295805/149‑1 (MQ=255)                                                                                                      gCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTAcc                                                <  2:347348/147‑1 (MQ=255)                                                                                                         ttCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGt                                           >  5:175476/1‑149 (MQ=255)                                                                                                            aTGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTAc                                        <  5:153723/149‑1 (MQ=255)                                                                                                            aTGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTAc                                        >  1:383118/1‑149 (MQ=255)                                                                                                                acacCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCt                                     >  4:356366/1‑148 (MQ=255)                                                                                                                 cacCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCtaa                                   >  6:33223/1‑147 (MQ=255)                                                                                                                 cacCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTca                                   <  6:90900/149‑1 (MQ=255)                                                                                                                                        ttGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCa                                                                                      >  8:112545/1‑75 (MQ=255)                                                                                                                                        ttGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCa                                                                                      <  7:112545/75‑1 (MQ=255)                                                                                                                                        ttGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTCAGCCAGCGTGTAACCATCTCCggc            >  8:361244/1‑147 (MQ=255)                                                                                                                                                ccTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTCAGCCAGCGTGTAACCATCGCCGTCGGTGCCAg    >  4:19576/1‑149 (MQ=255)                                                                                                                                                  ttGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTCAGCCAGCGTGTAACCATCGCCGTCGGTGCCAGCt  >  6:217167/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  AGCGAGTGAAGCGTCTGTACCACTGTGCCTCGTAGTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTCAGCCAGCGTGTAACCATCGCCGTCGGTGCCAGCT  >  NC_002947/3857653‑3857946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.