New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3857801 =	44 (0.680)	3 (0.050)	3/254	NT	7.2%	intergenic (+35/‑259)	PP_mr41/cbtA	Cobalamin regulatory region/cobalt transporter subunit A
	?	NC_002947	3857832 =	35 (0.560)					intergenic (+66/‑228)	PP_mr41/cbtA	Cobalamin regulatory region/cobalt transporter subunit A

GTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTCAGCCAGCGTGTAACCATCGCCGTCGGTGCCAGCTTGCTGGGTCTGTGCCTGGTCTACTTTGCCGGG  >  NC_002947/3857687‑3857978                                                                                                                                                  |                                                                                                                                                   gtaCGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTAtt                                                                                                                                                 <  2:295776/149‑1 (MQ=255)    cGGGATGGGATGGGGATGCGTTCCTGGATCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTTGCTTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACGACGTCCGGGGCTGCCGCGCTCGCCTATTGcc                                                                                                                                              <  6:83806/149‑1 (MQ=255)     ggCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGccc                                                                                                                                             <  1:81627/149‑1 (MQ=255)     gcaccgacggcgatggttacacgctggctgagcgtaacgggggtagcaaggctgtgttgtttggcgctggtgacgggcatgacgcgatcctctgctttttgtgggcaataGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGc                                                                                                                                               >  2:798‑M1/111‑147 (MQ=255)      gCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCca                                                                                                                                            >  7:238619/1‑149 (MQ=255)              aGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGc                                                                                                                                    <  8:238619/149‑1 (MQ=255)                            aGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCa                                                                                                                      <  8:47272/149‑1 (MQ=255)                              gAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAACCAGAGGATCGCGTCATg                                                                                                                    >  4:288002/1‑149 (MQ=255)                                    aGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATcgc                                                                                                                          >  8:147839/1‑137 (MQ=255)                                    aGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATcgc                                                                                                                          <  7:147839/137‑1 (MQ=255)                                         ttCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGGACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGt                                                                                                               <  8:117035/143‑1 (MQ=255)                                         ttCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGGACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGt                                                                                                               >  7:117035/1‑143 (MQ=255)                                             tCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAgcgc                                                                                                      >  6:153723/1‑148 (MQ=255)                                             tCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAgcgc                                                                                                      >  5:356636/1‑148 (MQ=255)                                               gCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCa                                                                                                    >  1:347348/1‑148 (MQ=255)                                                     ccGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAacaaca                                                                                             <  1:31675/149‑1 (MQ=255)                                                     ccGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAacaaca                                                                                             >  5:90900/1‑149 (MQ=255)                                                       ggAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAAcaca                                                                                           <  5:28703/149‑1 (MQ=255)                                                             cGGCCTGGCGTTCATGAACACCCCGCTGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTg                                                                                     <  3:288002/149‑1 (MQ=255)                                                               gCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGccc                                                                                                                 >  8:312242/1‑119 (MQ=255)                                                               gCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGccc                                                                                                                 <  7:312242/119‑1 (MQ=255)                                                                 cTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTAc                                                                                 <  6:295805/149‑1 (MQ=255)                                                                    gCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTAcc                                                                                <  2:347348/147‑1 (MQ=255)                                                                       ttCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGt                                                                           >  5:175476/1‑149 (MQ=255)                                                                          aTGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTAc                                                                        <  5:153723/149‑1 (MQ=255)                                                                          aTGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTAc                                                                        >  1:383118/1‑149 (MQ=255)                                                                              acacCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCt                                                                     >  4:356366/1‑148 (MQ=255)                                                                               cacCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCtaa                                                                   >  6:33223/1‑147 (MQ=255)                                                                               cacCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTca                                                                   <  6:90900/149‑1 (MQ=255)                                                                                                      ttGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCa                                                                                                                      <  7:112545/75‑1 (MQ=255)                                                                                                      ttGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCa                                                                                                                      >  8:112545/1‑75 (MQ=255)                                                                                                      ttGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTCAGCCAGCGTGTAACCATCTCCggc                                            >  8:361244/1‑147 (MQ=255)                                                                                                             gcaataggcgagcgcggcagccccggacgtggtcgccTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTCAGCCAGCGTGTAACCATCGCCGTCGGTGc                                       >  2:798‑M2/38‑147 (MQ=255)                                                                                                              ccTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTCAGCCAGCGTGTAACCATCGCCGTCGGTGCCAg                                    >  4:19576/1‑149 (MQ=255)                                                                                                                ttGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTCAGCCAGCGTGTAACCATCGCCGTCGGTGCCAGCt                                  >  6:217167/1‑149 (MQ=255)                                                                                                                    gcgagcgcggcagccccggacgtggtcgccTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTca                                                                   <  7:258538‑M2/82‑1 (MQ=255)                                                                                                                    gcgagcgcggcagccccggacgtggtcgccTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTca                                                                   >  8:258538‑M2/31‑112 (MQ=255)                                                                                                                     CGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTCAGCCAGCGTGTAACCATCGCCGTCGGTGCCAGCTTGCTg                             >  2:383118‑M1/1‑149 (MQ=255)                                                                                                                              ccGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTCAGCCAGCGTGTAACCATCGCCGTCGGTGCCAGCTTGCTGGGTCTGTGc                    >  2:322373/1‑149 (MQ=255)                                                                                                                               cGGTGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGAAACAATCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTCAGCCAGCGTGTAACCATCGCCGTCGGTGCCAGCTTGCTGGGTCTGTGcc                   >  5:283915/1‑149 (MQ=255)                                                                                                                                       ccGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTCAGCCAGCGTGTAACCATCGCCGTCGGTGCCAGCTTGCTGGGTCTGTGCCTGGTCTAc           >  7:318072/1‑149 (MQ=255)                                                                                                                                               ggcTATTTCACTCAAAAAGAAGATGATCGCGTGATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTCAGCCAGCGTGTAACCATCGCCGTCGGTGCCAGCTTGCTGGGTCTGTGCCTGGTCTACTTTGCCgg   <  6:283915‑M2/146‑1 (MQ=255)                                                                                                                                               gccTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTCAGCCAGCGTGTAACCATCGCCGTCGGTGCCAGCTTGCTGGGTCTGTGCCTGGTCTACTTTGcc     <  8:318072‑M2/144‑1 (MQ=255)                                                                                                                                                ccTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTCAGCCAGCGTGTAACCATCGCCGTCGGTGCCAGCTTGCTGGGTCTGTGCCTGGTCTACTTTGCCggg  <  3:19576‑M2/147‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   GTACGGCATGGGAAGGTGACGCGTTCCAGGAGCCCAGCTCTTCCTCGCAAGCCCGGAGACCGGCCTGGCGTTCATGAACACCCCGCGGTGGGCGGGCGCTGTTGCATTCCCTTGGGCGACCACGTCCGGGGCTGCCGCGCTCGCCTATTGCCCACAAAAAGCAGAGGATCGCGTCATGCCCGTCACCAGCGCCAAACAACACAGCCTTGCTACCCCCGTTACGCTCAGCCAGCGTGTAACCATCGCCGTCGGTGCCAGCTTGCTGGGTCTGTGCCTGGTCTACTTTGCCGGG  >  NC_002947/3857687‑3857978

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.