New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4172033	46 (0.710)	3 (0.050)	3/250	NT	6.2%	coding (90/879 nt)	PP_3670	DMT superfamily permease
	?	NC_002947	= 4172070	48 (0.780)					coding (53/879 nt)	PP_3670	DMT superfamily permease

CTGCAATACCGGCCGGCGGGTGCGCAACACGTTGAGCCCAGACTTGGGCAGGAAGATGCCGGCCATCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGATGACGGCGCGGCAGCATGCCCCGCCCAAGGAAGGCCGCGCAGGCA  >  NC_002947/4171886‑4172178                                                                                                                                                    |                                                                                                                                                   cTGCAATCCCGGCCGTCGGGGGCGCAAAACGTGGCGCCCAGACTTGTGAAGGAAGATGCCGGCCATCCGCAACGTGTGCACCACATAACGCGCCCACACCACCCGGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGt                                                                                                                                                   <  6:343869/149‑1 (MQ=255)   gCAATACCGGCCGGCGGGTGCGCAACACGTTGAGCCCAGACTTGGGCAGGAAGATGCCGGCCATCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGcgt                                                                                                                                                 >  3:151926‑M1/1‑146 (MQ=255)     aaTACCGGCCGGCGGGTGCGCAACACGTTGAGCCCAGACTTGGGCAGGAAGATGCCGGCCATCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGtggct                                                                                                                                               <  2:329297/149‑1 (MQ=255)            gccggcGGGTGCGCAACACGTTGAGCCCAGACTTGGGCAGGAAGATGCCGGCCATCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAAc                                                                                                                                        <  6:401463/149‑1 (MQ=255)            gccggcGGGTGCGCAACACGTTGAGCCCAGACTTGGGCAGGAAGATGCCGGCCATCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGCCTGGCGaa                                                                                                                                         >  3:63454/1‑148 (MQ=255)               ggcggGTGCTCAACACGTTGAGCCCAGACTTGGGCAGGAAGATGCCGGCCATCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑gg                                                                                                                                    <  4:228115/149‑1 (MQ=255)                              cGTTGAGCCCAGACTTGGGCAGGAAGATGCCGGCAATCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGccaccacc                                                                                                                     <  7:339357/149‑1 (MQ=255)                               gTTGAGCCCAGACTTGGGCAGGAAAATGCCGACCATCAGCAACGTGTGCACCAAATAAAGCGCCCACACCAAAAAGACAAAAGGAAACAGGCCAACAAGGAAATTGGAAAAGGAAACTTGGCAGACGAACA‑GGAACGACGccaccaca                                                                                                                     >  8:255417/1‑147 (MQ=255)                                        aGACTTGGGCAGGAAGATGCCGGCCATCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGcga                                                                                                           >  8:194510‑M2/1‑146 (MQ=255)                                          aCTTGGGCAGGAAGATGCCGGCCATCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGcgatg                                                                                                         >  2:325431‑M2/1‑144 (MQ=255)                                          aCTTGGGCAGGAAGATGCCGGCCATCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATAGGGTACATGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑TGAACGTCGCCACCACCACCAACGcgatt                                                                                                         <  1:166836‑M2/149‑6 (MQ=255)                                              gggCAGGAAGATGCCGGCCATCAGCAACGTGTGCACCAAATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGACACCACCACCAACGCGATGCcgc                                                                                                     >  1:406112/1‑149 (MQ=255)                                               ggCAGTAAGATGCCGGCCATCAGCAAGGTGTGCACCACATAACGCGCCCACACCACCATGCCTATCGGGTACAGGCCACCCAGGAATTTGGCCAAGGCCTCGTGGCTGGCGAACA‑GTCACGTCGCCACCACCACCAACGCGATGCcgcg                                                                                                    <  1:249628/149‑1 (MQ=255)                                               ggCAGGAAGATGCCGGCCATCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCcgcg                                                                                                    <  5:173721/149‑1 (MQ=255)                                                  aGGAAGATGCCGGCCATCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGcgttggtggtggtggcgacgttcctgttcgccagccacgatgccttgtcc                                                                                                  <  4:151926‑M1/149‑51 (MQ=255)                                                    gAAGATGCCGGCCATCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGcgttggtggtggtggcgacgttcctgttcgccagccacgatgcctt                                                                                                      <  7:326783‑M1/143‑47 (MQ=255)                                                    gAAGATGCCGGCCATCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGcgttggtggtggtggcgacgttcctgttcgccagccacgatgcctt                                                                                                      >  8:326783‑M1/1‑97 (MQ=255)                                                         tGCCGGCCATCATCAACGTGTGCACCACATAACGCGCCCACACCAACATGACTATCGGTTACAGGCCACCCATTAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCATCAACGCGATGCCGCGCAGGggttg                                                                                           <  7:255417/148‑1 (MQ=255)                                                          gCCGGCCATCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGggttggt                                                                                         >  7:322281/1‑149 (MQ=255)                                                            ccgacATCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACACAGCAATTTGGACAAGGCATCGTGGATCGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGACGCGCAGGggttggtt                                                                                        >  4:353638/5‑148 (MQ=255)                                                                 aTCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGcc                                                                                  <  8:322281/149‑1 (MQ=255)                                                                  tCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCg                                                                                 >  5:232220/1‑149 (MQ=255)                                                                           tgtgCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGgt                                                                        <  7:5309/149‑1 (MQ=255)                                                                                    caTAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGaa                                                               >  4:92414/1‑149 (MQ=255)                                                                                      tAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACt                                                             >  7:294499/1‑149 (MQ=255)                                                                                        aCGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGCCCGCGGTGTGCTGGAACTCa                                                           >  8:379899/1‑149 (MQ=255)                                                                                           cgcCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTAGTTGACGCCGGACAGCGGTGTGCTGGAACTCATgg                                                        <  4:166406/149‑1 (MQ=255)                                                                                             cccACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGct                                                      >  8:194889/1‑149 (MQ=255)                                                                                             cccACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGct                                                      >  5:391869/1‑149 (MQ=255)                                                                                               cacaCCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCg                                                                                 >  5:317670/1‑120 (MQ=255)                                                                                               cacaCCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCg                                                                                 <  6:317670/120‑1 (MQ=255)                                                                                                    caccaTGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGa                                               >  8:312528/1‑149 (MQ=255)                                                                                                           aCTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGATGACgg                                         <  7:194889/148‑1 (MQ=255)                                                                                                           aCTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGATGACgg                                         <  6:391869/148‑1 (MQ=255)                                                                                                            cTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGATGACGgcg                                       >  4:228291/1‑149 (MQ=255)                                                                                                             tATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACAGGGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGATGACGgcg                                       >  1:111041/1‑149 (MQ=255)                                                                                                             tATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGAt                                              <  2:381794/141‑1 (MQ=255)                                                                                                             tATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGAt                                              >  1:381794/1‑141 (MQ=255)                                                                                                               tCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCAt                                                          <  6:6978/127‑1 (MQ=255)                                                                                                               tCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCAt                                                          >  5:6978/1‑127 (MQ=255)                                                                                                                  ggTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTAGATGACGGCGCGgcag                                 >  4:283537/1‑149 (MQ=255)                                                                                                                      cAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCACCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGATGACGGCGCGGCAGCATg                             >  8:29206/1‑149 (MQ=255)                                                                                                                            aCCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGATGACGGCGCGGCAGCATGCCCCGc                       >  6:37273/1‑149 (MQ=255)                                                                                                                             cccAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGATGACGGCGCGGCAGCATGCCCCGcc                      >  4:249947/1‑149 (MQ=255)                                                                                                                               cAGGAATTTGGACAAGGCATCGTGGCTGGCGAAAA‑GGAACGTCGCCACCAACACCAACGCGATGCCGCGCAGGGGTTCGTTGACGCCGCACAGCGGTGTGCTGGAACTCATGGCTCTCTCGATGACGGCGCGGCAGCATGCCCCGccc                     >  8:44930/1‑148 (MQ=255)                                                                                                                                 ggAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGATGACGGCGCGGCAGCATGCCCCGCCCaag                  <  3:139896/149‑1 (MQ=255)                                                                                                                                    aTTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGATGACGGCGCGGCAGCATGCCCCGCCCaaggaa               <  8:386539/149‑1 (MQ=255)                                                                                                                                    aTTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGATGACGGCGCGGCAGCATGCCCCGCCCaagg                 >  7:386539/1‑147 (MQ=255)                                                                                                                                     tttGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGATGACGGCGCGGCAGCATGCCCCGCCCaaggaag              <  7:312528/149‑1 (MQ=255)                                                                                                                                       tGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGATGACGGCGCGGCAGCATGCCCCGCCCaaggaagg             <  3:283537/148‑1 (MQ=255)                                                                                                                                        ggACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGcgatgccttgtccaaattcctgggtggcctgtacccgatagtcatggtggtgtgggcgcgttatgtggtgcacacgttgctgatggccggcatcttcct           <  4:151926‑M2/149‑100 (MQ=255)                                                                                                                                        ggACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGATGACGGCGCGGCAGCATGCCCCGCCCAAGGAAGGcc           >  7:54790/1‑149 (MQ=255)                                                                                                                                         gACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATgg                                                        >  6:130818/1‑103 (MQ=255)                                                                                                                                         gACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATgg                                                        <  5:130818/103‑1 (MQ=255)                                                                                                                                            aaGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGcgatgccttgtccaaattcctgggtggcctgtacccgatagtcatggtggtgtgggcgcgttatgtggtgcacacgttgctgatggccggcatcttc             <  7:326783‑M2/143‑98 (MQ=255)                                                                                                                                            aaGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGcgatgccttgtccaaattcctgggtggcctgtacccgatagtcatggtggtgtgggcgcgttatgtggtgcacacgttgctgatggccggcatcttc             >  8:326783‑M2/1‑46 (MQ=255)                                                                                                                                              ggCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGATGACGGCGCGGCAGCATGCCCCGCCCAAGGAAGGCCGCGCAg     >  3:315192/1‑149 (MQ=255)                                                                                                                                              ggCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGATGACGGCGCGGCAGCATGCCCCGCCCAAGGAAGGCCGCGCAg     >  1:163626/1‑149 (MQ=255)                                                                                                                                                cATCGcgttggtggtggtggcgacgttcctgttcgccagccacgatgccttgtccaaattcctgggtggcctgtacccgatagtcatggtggtgtgggcgcgttatgtggtgcacacgttgctgatggccggcatcttcctgcccaagt    >  2:325431‑M1/1‑5 (MQ=255)                                                                                                                                                aatCGcgttggtggtggtggcgacgttcatgttcgccagccacgatgccttgtccaaattcctgggtggcatgtaccctatagtcatggtggtgtgggcgcgttatgtggtgcacacgttgctgatggccggcatcttcctgcccaagt    <  1:166836‑M1/148‑145 (MQ=255)                                                                                                                                                  tCGcgttggtggtggtggcgacgttcctgttcgccagccacgatgccttgtccaaattcctgggtggcctgtacccgatagtcatggtggtgtgggcgcgttatgtggtgcacacgttgctgatggccggcatcttcctgcccaagtct  >  8:194510‑M1/1‑3 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CTGCAATACCGGCCGGCGGGTGCGCAACACGTTGAGCCCAGACTTGGGCAGGAAGATGCCGGCCATCAGCAACGTGTGCACCACATAACGCGCCCACACCACCATGACTATCGGGTACAGGCCACCCAGGAATTTGGACAAGGCATCGTGGCTGGCGAACA‑GGAACGTCGCCACCACCACCAACGCGATGCCGCGCAGGGGTTGGTTGACGCCGGACAGCGGTGTGCTGGAACTCATGGCTCTCTCGATGACGGCGCGGCAGCATGCCCCGCCCAAGGAAGGCCGCGCAGGCA  >  NC_002947/4171886‑4172178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.