New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4319235	39 (0.600)	4 (0.070)	4/246	NT	9.8%	coding (206/807 nt)	PP_3790	diaminopimelate epimerase
	?	NC_002947	= 4319255	37 (0.610)					coding (226/807 nt)	PP_3790	diaminopimelate epimerase

GTTTGATTGCTCCAAACCGATGATTTCACGTATTTGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACGGGCAGCGGATTTCGATCGCCATGGGCC  >  NC_002947/4319092‑4319381                                                                                                                                                |                                                                                                                                                   gTTTGATTGCTCCAAACCGATGATTTCACGTATTTGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGAGCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTg                                                                                                                                               <  6:311010/149‑1 (MQ=255)  tttGATTGCTCCAAACCGATGATTTCACGTATTTGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTgg                                                                                                                                              <  8:199111/149‑1 (MQ=255)          cTCCAAACCGATGATTTCACGTATTTGCGACCGACACAGCGGGTAGCGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGATCCCAGGCAGAGAAAAGTGGTAATGGc                                                                                                                                       >  4:229423/1‑148 (MQ=255)           tCCAAACCGATGATTTCACGTATTTGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCt                                                                                                                                     >  7:126354/1‑149 (MQ=255)            ccAAACCGATGATTTCACGTATTTGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTg                                                                                                                                    >  4:43732/1‑149 (MQ=255)             cAAACCGATGATTTCACGTATTTGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAtacgcaggccattacca                                                                                                                                   >  5:156820‑M1/1‑132 (MQ=255)              aaaCCGATGATTTCACGTATTTGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCg                                                                                                                                  >  1:196543/1‑149 (MQ=255)                   gatgatTTCACGTATTTGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTAttc                                                                                                                             <  3:115648‑M2/149‑4 (MQ=255)                    atgatTTCACGTATTTGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTAttct                                                                                                                            <  3:12127‑M2/149‑5 (MQ=255)                            aCGTATTTGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAtacgcaggccattaccacttttctctgcctg                                                                                                                     <  6:156820‑M1/148‑32 (MQ=255)                            aCGTATTTGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGAAGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGc                                                                                                                     >  1:326020/1‑148 (MQ=255)                                   tGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTtgt                                                                                                              <  3:64288/148‑1 (MQ=255)                                    gCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTtgtg                                                                                                             <  6:353691/148‑1 (MQ=255)                                     cgaccgacACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTggg                                                                                                           <  8:358278/149‑1 (MQ=255)                                      gaccgacACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAtacgcaggccattaccacttttctctgc                                                                                                                        >  4:93801‑M1/1‑107 (MQ=255)                                      gaccgacACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAtacgcaggccattaccacttttctctgc                                                                                                                        <  3:93801‑M1/135‑29 (MQ=255)                                      gaccgacACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGa                                                                                                          >  6:417371/1‑149 (MQ=255)                                        ccgacACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATc                                                                                                        <  4:115648/149‑1 (MQ=255)                                             acCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGaa                                                                                                    >  2:373931/1‑148 (MQ=255)                                             acCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGaa                                                                                                    >  4:48680/1‑148 (MQ=255)                                              ccGCGGGTTTGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGCACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGt                                                                                                                                             <  8:249415/106‑1 (MQ=255)                                              ccGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGCACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGt                                                                                                                                             >  7:249415/1‑106 (MQ=255)                                               cgcgGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAatat                                                                                                 >  8:101184/1‑149 (MQ=255)                                                gcgGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACCTGTGGGATCAGAATATc                                                                                                <  8:126354/149‑1 (MQ=255)                                                            gCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGTAAAGTGGTTATGGCCTGCGGTTTGTATGCCGCTTCTTGTTGGAAGAGAATATGGTTGCCGGttaa                                                                                    >  1:329342/1‑147 (MQ=255)                                                              gACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCAcc                                                                                  <  7:166881/149‑1 (MQ=255)                                                                    aTACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCgg                                                                                        <  4:80595/137‑1 (MQ=255)                                                                    aTACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCgg                                                                                        >  3:80595/1‑137 (MQ=255)                                                                             ccGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGAc                                                                   <  3:43732/149‑1 (MQ=255)                                                                                      aaaGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAgggg                                                           <  1:373931/148‑1 (MQ=255)                                                                                         gaagGTGAACGGTTGTCGGTACGGATCTACAACTCAGAGTGTTCCCAGGCAGAGTAATTTGGTTATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGTTCTGAATTTGGTGGCCGGTTCACCCTTTTAAATATAGACCAAAggttttat                                                       <  2:196543/149‑7 (MQ=255)                                                                                          aagGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGGTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATc                                                      <  3:229423/149‑1 (MQ=255)                                                                                           agGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCg                                                     <  4:12127/149‑1 (MQ=255)                                                                                                aaCGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCAc                                                 <  2:326020/148‑1 (MQ=255)                                                                                                        tCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAgg                                         <  5:417371/148‑1 (MQ=255)                                                                                                          ggTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTa                                       <  3:48680/148‑1 (MQ=255)                                                                                                           gTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACt                                     >  4:169094/1‑149 (MQ=255)                                                                                                                 aTCTACAACACAGACGGATCACAGGCAGAGAAAACTGGTAATGGCCTGCGTATACTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCATTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACaa                               >  5:178353/1‑149 (MQ=255)                                                                                                                       aacaCAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACggg                           >  1:205520/1‑147 (MQ=255)                                                                                                                       aacaCAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACgg                            >  2:171697/1‑146 (MQ=255)                                                                                                                       aacaCAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACgg                            <  1:171697/146‑1 (MQ=255)                                                                                                                          acaGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGAGCAGAATTTCGTGGCCGGTTCACGCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACGGGCAGCg                      >  8:354686/1‑149 (MQ=255)                                                                                                                            aGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACgg                            <  6:175986/141‑1 (MQ=255)                                                                                                                            aGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACgg                            >  5:175986/1‑141 (MQ=255)                                                                                                                              aCGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCGAGGTACTCGACAACGGGCAGCGGAtt                  >  6:378985/1‑149 (MQ=255)                                                                                                                              aCGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACGGGCAGCGGAtt                  >  4:145118/1‑149 (MQ=255)                                                                                                                                      cAGGCAGAGAAAAGTGGTAATGGCCTGCGTAttctctgcctgggaaccgtctgtgttgtagatccgtaccgacaaccgttcaccttctttgatcaccggcaccagtatgccgtcgctgcccaacccgcggtgtcggtcgcaaatacgt           <  6:156820‑M2/148‑118 (MQ=255)                                                                                                                                         gCAGAGAAAAGTGGTAATGGCCTGCGTAttctctgcctgggaaccgtctgtgttgtagatccgtaccgacaaccgttcaccttctttgatcaccggcaccagtatgccgtcgctgcccaacccgcggtgtcggtc                     >  4:93801‑M2/1‑28 (MQ=255)                                                                                                                                         gCAGAGAAAAGTGGTAATGGCCTGCGTAttctctgcctgggaaccgtctgtgttgtagatccgtaccgacaaccgttcaccttctttgatcaccggcaccagtatgccgtcgctgcccaacccgcggtgtcggtc                     <  3:93801‑M2/135‑108 (MQ=255)                                                                                                                                             agaAtacgcaggccattaccacttttctctgcctgggaaccgtctgtgttgtagatccgtaccgacaaccgttcaccttctttgatcaccggcaccagtatgccgtcgctgcccaacccgcggtgtcggtcgcaaatacgtgaaatcat   <  3:12127‑M1/149‑146 (MQ=255)                                                                                                                                              gaAtacgcaggccattaccacttttctctgcctgggaaccgtctgtgttgtagatccgtaccgacaaccgttcaccttctttgatcaccggcaccagtatgccgtcgctgcccaacccgcggtgtcggtcgcaaatacgtgaaatcatc  <  3:115648‑M1/149‑147 (MQ=255)                                                                                                                                               aaaaGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACGGGCAGCGGATTTCGATCGCCATGGGc   >  6:133392/1‑147 (MQ=255)                                                                                                                                                |                                                                                                                                                   GTTTGATTGCTCCAAACCGATGATTTCACGTATTTGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACGGGCAGCGGATTTCGATCGCCATGGGCC  >  NC_002947/4319092‑4319381

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.