New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4319235	39 (0.600)	4 (0.070)	4/246	NT	9.8%	coding (206/807 nt)	PP_3790	diaminopimelate epimerase
	?	NC_002947	= 4319255	37 (0.610)					coding (226/807 nt)	PP_3790	diaminopimelate epimerase

GATGATTTCACGTATTTGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACGGGCAGCGGATTTCGATCGCCATGGGCCAGGCTGCTTTTGCCAATAC  >  NC_002947/4319110‑4319400                                                                                                                                                  |                                                                                                                                                  gatgatTTCACGTATTTGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTAttc                                                                                                                                                <  3:115648‑M2/149‑4 (MQ=255)  atgatTTCACGTATTTGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTAttct                                                                                                                                               <  3:12127‑M2/149‑5 (MQ=255)          aCGTATTTGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGAAGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGc                                                                                                                                        >  1:326020/1‑148 (MQ=255)                 tGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTtgt                                                                                                                                 <  3:64288/148‑1 (MQ=255)                  gCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTtgtg                                                                                                                                <  6:353691/148‑1 (MQ=255)                   cgaccgacACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTggg                                                                                                                              <  8:358278/149‑1 (MQ=255)                    gaccgacACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGa                                                                                                                             >  6:417371/1‑149 (MQ=255)                      ccgacACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATc                                                                                                                           <  4:115648/149‑1 (MQ=255)                           acCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGaa                                                                                                                       >  2:373931/1‑148 (MQ=255)                           acCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGaa                                                                                                                       >  4:48680/1‑148 (MQ=255)                             cgcgGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAatat                                                                                                                    >  8:101184/1‑149 (MQ=255)                              gcgGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACCTGTGGGATCAGAATATc                                                                                                                   <  8:126354/149‑1 (MQ=255)                                          gCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGTAAAGTGGTTATGGCCTGCGGTTTGTATGCCGCTTCTTGTTGGAAGAGAATATGGTTGCCGGttaa                                                                                                       >  1:329342/1‑147 (MQ=255)                                            gACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCAcc                                                                                                     <  7:166881/149‑1 (MQ=255)                                                  aTACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCgg                                                                                                           <  4:80595/137‑1 (MQ=255)                                                  aTACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCgg                                                                                                           >  3:80595/1‑137 (MQ=255)                                                           ccGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGAc                                                                                      <  3:43732/149‑1 (MQ=255)                                                                    aaaGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAgggg                                                                              <  1:373931/148‑1 (MQ=255)                                                                       gaagGTGAACGGTTGTCGGTACGGATCTACAACTCAGAGTGTTCCCAGGCAGAGTAATTTGGTTATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGTTCTGAATTTGGTGGCCGGTTCACCCTTTTAAATATAGACCAAAggttttat                                                                          <  2:196543/149‑7 (MQ=255)                                                                        aagGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGGTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATc                                                                         <  3:229423/149‑1 (MQ=255)                                                                         agGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCg                                                                        <  4:12127/149‑1 (MQ=255)                                                                              aaCGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCAc                                                                    <  2:326020/148‑1 (MQ=255)                                                                                      tCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAgg                                                            <  5:417371/148‑1 (MQ=255)                                                                                        ggTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTa                                                          <  3:48680/148‑1 (MQ=255)                                                                                         gTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACt                                                        >  4:169094/1‑149 (MQ=255)                                                                                               aTCTACAACACAGACGGATCACAGGCAGAGAAAACTGGTAATGGCCTGCGTATACTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCATTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACaa                                                  >  5:178353/1‑149 (MQ=255)                                                                                                     aacaCAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACggg                                              >  1:205520/1‑147 (MQ=255)                                                                                                     aacaCAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACgg                                               <  1:171697/146‑1 (MQ=255)                                                                                                     aacaCAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACgg                                               >  2:171697/1‑146 (MQ=255)                                                                                                        acaGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGAGCAGAATTTCGTGGCCGGTTCACGCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACGGGCAGCg                                         >  8:354686/1‑149 (MQ=255)                                                                                                          aGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACgg                                               >  5:175986/1‑141 (MQ=255)                                                                                                          aGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACgg                                               <  6:175986/141‑1 (MQ=255)                                                                                                            aCGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCGAGGTACTCGACAACGGGCAGCGGAtt                                     >  6:378985/1‑149 (MQ=255)                                                                                                            aCGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACGGGCAGCGGAtt                                     >  4:145118/1‑149 (MQ=255)                                                                                                                    cAGGCAGAGAAAAGTGGTAATGGCCTGCGTAttctctgcctgggaaccgtctgtgttgtagatccgtaccgacaaccgttcaccttctttgatcaccggcaccagtatgccgtcgctgcccaacccgcggtgtcggtcgcaaatacgt                              <  6:156820‑M2/148‑118 (MQ=255)                                                                                                                       gCAGAGAAAAGTGGTAATGGCCTGCGTAttctctgcctgggaaccgtctgtgttgtagatccgtaccgacaaccgttcaccttctttgatcaccggcaccagtatgccgtcgctgcccaacccgcggtgtcggtc                                        >  4:93801‑M2/1‑28 (MQ=255)                                                                                                                       gCAGAGAAAAGTGGTAATGGCCTGCGTAttctctgcctgggaaccgtctgtgttgtagatccgtaccgacaaccgttcaccttctttgatcaccggcaccagtatgccgtcgctgcccaacccgcggtgtcggtc                                        <  3:93801‑M2/135‑108 (MQ=255)                                                                                                                             aaaaGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACGGGCAGCGGATTTCGATCGCCATGGGc                      >  6:133392/1‑147 (MQ=255)                                                                                                                                  tGGTAATGGCCTGCGTAttctctgcctgggaaccgtctgtgttgtagatccgtaccgacaaccgttcaccttctttgatcaccggcaccagtatgccgtcgctgcccaacccgcggtgtcggtcgcaaatacgtgaaatcatcggtttg               >  5:156820‑M2/1‑17 (MQ=255)                                                                                                                                    gTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACGGGCAGCGGATTTCGATCGCCATGGGCCAGgctgct             >  1:291416/1‑149 (MQ=255)                                                                                                                                      aaTGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACGGGCAGCGGATTTCGATCGCCATGGGCCAGGCTGCttt           >  4:293163/1‑149 (MQ=255)                                                                                                                                          gacTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACGGGCAGCGGATTTCGATCGCCATGGGCCAGGCTGCTTTTGc        <  3:169094/146‑1 (MQ=255)                                                                                                                                          gCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACGGGCAGCGGATTTCGATCGCCATGGGCCAGGCTGCTTTTGc        <  2:329342/148‑1 (MQ=255)                                                                                                                                            cTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCGAGGTACTCGACAACGGGCAGCGGATTTCGATCGCCATGGGCCAGGCTGGTTTTGCCaa     >  7:359727/1‑149 (MQ=255)                                                                                                                                               cGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACGGGCAGCGGATTTCGATCGCCATGGGCCAGGCTGCTTTTGCCAATAc  <  3:145118/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  GATGATTTCACGTATTTGCGACCGACACCGCGGGTTGGGCAGCGACGGCATACTGGTGCCGGTGATCAAAGAAGGTGAACGGTTGTCGGTACGGATCTACAACACAGACGGTTCCCAGGCAGAGAAAAGTGGTAATGGCCTGCGTATTCTCTGCCGCTACTTGTGGGATCAGAATATCGTGGCCGGTTCACCCTTTGAAATATCGACCAAAGGGGGGATCGTCACCTGCCAGGTACTCGACAACGGGCAGCGGATTTCGATCGCCATGGGCCAGGCTGCTTTTGCCAATAC  >  NC_002947/4319110‑4319400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.