| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5671615 = | 35 (0.540) | 5 (0.090) | 5/216 | NT | 15.0% | intergenic (+34/‑136) | PP_4978/PP_4979 | hypothetical protein/substrate‑binding protein |
| ? | NC_002947 | 5671700 = | 28 (0.530) | intergenic (+119/‑51) | PP_4978/PP_4979 | hypothetical protein/substrate‑binding protein | |||||
ACGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCT > NC_002947/5671469‑5671693 | cagtcgtcggttaccaggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgatgt < 3:72152‑M1/3‑1 (MQ=255)cagtcgtcggttaccaggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgatgt < 7:174467‑M1/3‑1 (MQ=255)aCGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTtgt < 6:302740/149‑1 (MQ=255)aCGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTtgt > 8:165101/1‑149 (MQ=255)aCGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTtgt > 1:406226/1‑149 (MQ=255)aCGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTtgt < 7:253383/149‑1 (MQ=255)aCGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTtgt < 7:381760/149‑1 (MQ=255) gTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTgg < 5:281008/149‑1 (MQ=255) gTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTgg < 2:218582/149‑1 (MQ=255) ggttaccaggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCgg > 2:33131‑M1/139‑149 (MQ=255) cccGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCgg < 2:384837/149‑1 (MQ=255) cccGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCgg > 5:234701/1‑149 (MQ=255) ccaggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcactgcattatcgaTGTGGGAGCGGGCGt > 1:4960‑M1/135‑149 (MQ=255) ccaggcgcaagcgttcgcccagagccaccgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGt > 4:263574‑M1/134‑148 (MQ=255) aggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGc < 6:325177‑M1/9‑1 (MQ=255) aggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGc > 5:325177‑M1/132‑140 (MQ=255) gCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGccc < 2:299916/149‑1 (MQ=255) cTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCcg < 2:176770/149‑1 (MQ=255) gcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCcgc < 3:181282‑M1/21‑1 (MQ=255) caagcgttcacccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCCGCGa > 7:145666‑M1/127‑149 (MQ=255) cGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCcgc < 1:352583/147‑1 (MQ=255) gTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGaa < 6:234701/149‑1 (MQ=255) gTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGaa < 5:148227/149‑1 (MQ=255) gTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCACGCCcgctcc < 7:281925/149‑4 (MQ=255) gTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAagaga < 7:90582/149‑1 (MQ=255) ccTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGaacaccggc > 1:323541/1‑142 (MQ=255) cgcCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAAcc < 6:368700/148‑1 (MQ=255) cgcCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAAc < 6:229131/147‑1 (MQ=255) cgcCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAAc < 7:105663/147‑1 (MQ=255) aTCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATc < 4:121348/149‑1 (MQ=255) cGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCAcc < 2:95757/147‑1 (MQ=255) cGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCg < 7:165101/148‑1 (MQ=255) aggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcgcccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGc < 7:216367‑M1/51‑1 (MQ=255) cTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGaa > 7:277630/1‑120 (MQ=255) cTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGaa < 8:277630/120‑1 (MQ=255) gCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCg < 4:310825/149‑1 (MQ=255) cTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAagag > 1:38791/1‑117 (MQ=255) cTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAagag < 2:38791/117‑1 (MQ=255) gatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCgg > 4:181282‑M1/82‑149 (MQ=255) ggcgCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAagagag > 4:268175/1‑109 (MQ=255) ggcgCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAagagag < 3:268175/109‑1 (MQ=255) tccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGc > 8:216367‑M1/80‑149 (MQ=255) gATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCg > 5:406731/1‑149 (MQ=255) gATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCg < 6:406731/149‑1 (MQ=255) atatCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGc < 6:205438/149‑1 (MQ=255) tatCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCt < 2:406226/149‑1 (MQ=255) aTCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCgg < 6:143264/127‑1 (MQ=255) aTCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCgg > 5:143264/1‑127 (MQ=255) cGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCcgc < 2:256032/72‑1 (MQ=255) cGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCcgc > 1:256032/1‑72 (MQ=255) ccAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCgg < 3:157956/111‑1 (MQ=255) ccAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCgg > 4:157956/1‑111 (MQ=255) tGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCgg > 3:157381/1‑104 (MQ=255) tGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCgg < 4:157381/104‑1 (MQ=255) gctcggcctgtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCggg > 2:18108‑M1/37‑105 (MQ=255) gctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCggg < 1:18108‑M1/69‑1 (MQ=255) | ACGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGCTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGGTCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCT > NC_002947/5671469‑5671693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |