New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5671615 =	35 (0.540)	5 (0.090)	5/216	NT	15.0%	intergenic (+34/‑136)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	5671700 =	28 (0.530)					intergenic (+119/‑51)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein

GGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTGGTAACCGACGACTGGGC  >  NC_002947/5671618‑5671848                                                                                       |                                                                                                                                                      GGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGccc                                                                                    <  8:271009‑M1/149‑1 (MQ=255)   GAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGTGATCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGccc                                                                                    <  1:111042‑M1/149‑1 (MQ=255)     GCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCt                                                                                <  3:337080‑M1/149‑1 (MQ=255)         GCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTc                                                                            <  8:94853‑M1/149‑1 (MQ=255)               ccGCGAAGAGAGCAACCCGATCGTTGGCACAGGCTTCGCCTGTGT‑‑TCGCGGGCACGCACGCTCCC‑‑ACATCGATAATTAA‑TGCATTTACCGTAAACAGGCAGAGAGCGTAATCTCCGGCAATGCCACATATCGCACGTCTGTTCTGGATc                                                                      >  1:26150/1‑149 (MQ=255)               CCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGT‑‑TCGTGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATc                                                                      <  5:366563‑M1/149‑1 (MQ=255)                 gcccgcgaacaccggcgaagccggtgccaacgatcgggttgctctcttcgcgggcacgcccgctcccacaTCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGa                                                                        >  8:216367‑M2/71‑149 (MQ=255)                  cccgcgaacaccggcgaagccggtgccaacgatcgggttgctctcttcgcgggcacgcccgctcccacaTCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAgc                                                                                                                   <  1:18108‑M2/36‑1 (MQ=255)                  cccgcgaacaccggcgaagccggtgccaacgatcgggttgctctcttcgcgggcacgcccgctcccacaTCGATAATGCA‑TGCCTTTACCGTACACAGGCCGAgc                                                                                                                   >  2:18108‑M2/70‑105 (MQ=255)                   ccgcgaacaccggcgaagccggtgccaacgatcgggttgctctcttcgcgggcacgcccgctcccacaTCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATc                                                                      >  4:181282‑M2/69‑149 (MQ=255)                   GAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCctgc                                                                  <  3:222615‑M1/149‑1 (MQ=255)                    AAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCctgct                                                                 >  7:271009‑M1/1‑149 (MQ=255)                      gagagCAACCCGATCGTTGGCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCCGAACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATCCCACATATCGCCCGTCTGTTCTGGATCcagct                                                                 >  1:115982/1‑149 (MQ=39)                              cccGATCGTTGGCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGc                                                       >  7:204383/1‑149 (MQ=255)                              cccGATCGTTGGCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGc                                                       >  6:375639/1‑149 (MQ=255)                              cccGATCGTTGGCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGc                                                       >  6:333072/1‑149 (MQ=255)                               ccGATCGTTGGCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGcc                                                      >  3:224856/1‑149 (MQ=255)                                cGATCGTTGGCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCt                                                     >  5:47215/1‑149 (MQ=255)                                cGATCGTTGGCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCt                                                     <  4:337080/149‑1 (MQ=255)                                 gATCGTTGGCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATc                                                                      <  2:340794/131‑1 (MQ=255)                                 gATCGTTGGCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATc                                                                      >  1:340794/1‑131 (MQ=255)                                    gccggtgccaacgatcgggttgctctcttcgcgggcacgcccgctcccacaTCGATAATGCA‑TGCCTTTACCGTACACCGGGCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCt                                                     <  7:216367‑M2/98‑1 (MQ=255)                                      ttGGCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGccc                                               >  5:29713/1‑149 (MQ=255)                                      ttGGCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGccc                                               >  2:389923/1‑149 (MQ=255)                                         gCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGtt                                            >  5:365613/1‑149 (MQ=255)                                         gCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGtt                                            <  4:222615/149‑1 (MQ=255)                                          cACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTTCTCGTTTGCCTGAGCCCGTTg                                           >  6:124793/1‑149 (MQ=255)                                           aCCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGAGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCGGGATCCTGCTGGTCGTTTGCCTGAGACGGTTgg                                          >  4:240188/1‑149 (MQ=39)                                            ccGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGc                                         <  8:204383/149‑1 (MQ=255)                                             cGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTg                                           <  4:253892/146‑1 (MQ=255)                                             cGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTg                                           >  3:248771/1‑146 (MQ=255)                                             cGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTg                                           >  3:253892/1‑146 (MQ=255)                                             cGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTg                                           <  4:248771/146‑1 (MQ=255)                                             cGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGct                                        >  4:384679/1‑149 (MQ=255)                                              ggCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGctc                                       <  6:365613/149‑1 (MQ=255)                                                 ttCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTgg                                    >  8:174467/1‑149 (MQ=255)                                                   cGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTgg                                    <  5:333072/147‑1 (MQ=255)                                                    gCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGc                                  >  4:72152/1‑148 (MQ=255)                                                    gCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCg                                 <  2:111042/149‑1 (MQ=255)                                                     ccGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCg                                 >  8:235717/1‑148 (MQ=255)                                                                tcgcgggcacgcccgctcccacaTCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGTGAACGCTTg                         >  7:145666‑M2/24‑149 (MQ=255)                                                                  gcgggcacgcccgctcccacaTCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTgc                        <  3:181282‑M2/127‑1 (MQ=255)                                                                        acgcccgctcccacaTCGATAATGCAGTGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTgg                  >  1:4960‑M2/16‑149 (MQ=255)                                                                        acgcccgctcccacaTCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGGTGGCTCTGGGCGAACGCTTGCGCCTgg                  >  4:263574‑M2/16‑148 (MQ=255)                                                                            ccgctcccacaTCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTGGTAAcc             >  2:33131‑M2/12‑149 (MQ=255)                                                                              gctcccacaTCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCt                    <  6:325177‑M2/131‑1 (MQ=255)                                                                              gctcccacaTCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCt                    >  5:325177‑M2/10‑140 (MQ=255)                                                                                    acaTCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTGGTAACCGACGACTg     <  3:72152‑M2/146‑1 (MQ=255)                                                                                    acaTCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTGGTAACCGACGACTg     <  7:174467‑M2/146‑1 (MQ=255)                                                                                       tCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGTGAACGCTTGCGCCTGGTAACCGACGACTGGGc  <  8:145666/149‑1 (MQ=255)                                                                                       |                                                                                                                                                      GGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGGTGT‑‑TCGCGGGCACGCCCGCTCCC‑‑ACATCGATAATGCA‑TGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTGGTAACCGACGACTGGGC  >  NC_002947/5671618‑5671848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.