New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1974528 =	52 (0.800)	4 (0.060)	4/252	NT	8.0%	coding (538/1086 nt)	serC	3‑phosphoserine/phosphohydroxythreonine aminotransferase
	?	NC_002947	1974623 =	43 (0.690)					coding (633/1086 nt)	serC	3‑phosphoserine/phosphohydroxythreonine aminotransferase

TGCCGCAAACCGGTGACGTGCCGCTGGTGGTCGATATGTCGTCCGACATCCTCTCGCGCCCGATCGATGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACTCCTGGTACCTCTCTGGCCTGGTCTTCGAGTGGCTGAAAGAG  >  NC_002947/1974475‑1974761                                                                                                                                                     |                                                                                                                                           ccttgtagtcgagcatggtcgggcagctgctgcgggcatggcccaacatgtctTCGCGCCCGATCGATGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGaa                                                                                                                                            >  8:96758‑M1/54‑149 (MQ=255)  gCCGCAAACCGGTGACGTGCCGCTGGTGGTCGATATGTCGTCCGACATCCTCTCGCGCCCGATCGATGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAg                                                                                                                                           <  1:209471/149‑1 (MQ=255)    cGCAAACCGGTGACGTGCCGCTGGTGGTCGATATGTCGTCCGACATCCTCTCGCGCCCGATCGATGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGAc                                                                                                                                         >  1:161630/1‑149 (MQ=255)    cGCAAACCGGTGACGTGCCGCTGGTGGTCGATATGTCGTCCGACATCCTCTCGCGCCCGATCGATGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGAc                                                                                                                                         <  1:5599/149‑1 (MQ=255)     gtagtcgagcatggtcgggcagctgctgcgggcatggcccaacaggtctTCGCGCCCGATCGATGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGa                                                                                                                                          >  7:157742‑M1/50‑147 (MQ=255)           cGGTGACGTGCCGCTGGTGGTCGATATGTCGTCCGACATCCTCTCGCGCCCGATCGATGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCTAAGACCTGTTg                                                                                                                                   <  8:117484/148‑1 (MQ=255)           cGGTGACGTGCCGCTGGTGGTCGATATGTCGTCCGACATCCTCTCGCGCCCGATCGATGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGCTGGTGGTGATCGTGCGCGAAGACCTGTTg                                                                                                                                   >  7:117484/1‑148 (MQ=255)                           gtggtCGATATGTCGTCCGACATCCTCTCGCGCCCGATCGATGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGcagcag                                                                                                                  <  2:146634/149‑1 (MQ=255)                                  atatGTCGTCCGACATCCTCTCGCGCCCGATCGATGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGc                                                                                                                                <  4:37299/128‑1 (MQ=255)                                  atatGTCGTCCGACATCCTCTCGCGCCCGATCGATGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGc                                                                                                                                >  3:37299/1‑128 (MQ=255)                                     tGTCGTCCGACATCCTCTCGCGCCCGATCGATGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGAcc                                                                                                        <  3:112311/149‑1 (MQ=255)                                               cATCCTCTCGCGCCCGATCGATGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACt                                                                                              <  7:348349/149‑1 (MQ=255)                                                   tcttcgcgcacgatcaccaccaccaggccgcttgggccgatattcttctgcgcgccggcgtagatcaggccgaactgcgacacatcgatcgggcgcgaAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTAc                                                                                            >  7:157742‑M2/99‑147 (MQ=255)                                                    tctcGCGCCCGATCGATGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAg                                                                                         >  8:323522/1‑149 (MQ=255)                                                     ttcgcgcacgatcaccaccaccaggccgcttgggccgatattcttctgcgcgccggcgtagatcaggccgaactgcgacacatcgatcgggcgcgaAGACATGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAgg                                                                                        >  8:96758‑M2/97‑149 (MQ=255)                                                        GCGCCCGATCGATGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGtt                                                                                      >  2:135542‑M1/1‑148 (MQ=255)                                                         ggcacgatcgatGTGTCGCATTTCGGCCTGATATACGCAGGCGCGAAGAAGAATATCGGCCCAAGAGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGTCCATGCCAGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTc                                                                                    <  3:53474/145‑1 (MQ=255)                                                           cacgatcaccaccaccaggccgcttgggccgatattcttctgcgcgccggcgtagatcaggccgaactgcgacacatcgatcgggcgcgaAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCgg                                                                                  <  7:96758‑M2/59‑1 (MQ=255)                                                            ccGATCGATGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGc                                                                                 <  7:55213/149‑1 (MQ=255)                                                              gatcgatGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGcagcag                                                                                                                  >  1:63363/1‑114 (MQ=255)                                                              gatcgatGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGcagcag                                                                                                                  <  2:63363/114‑1 (MQ=255)                                                               atcgatGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGa                                                                              <  4:16097/149‑1 (MQ=255)                                                                     gtgtCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGCCCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGCCTACAAGGTTTCGGCTGACAACgg                                                                        >  5:326662/1‑149 (MQ=255)                                                                     gtgtCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACgg                                                                        >  8:233942/1‑149 (MQ=255)                                                                      tgtCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGc                                                                       >  5:174093/1‑149 (MQ=255)                                                                      tgtCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGc                                                                       >  2:144786/1‑149 (MQ=255)                                                                       gtCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCt                                                                      >  5:178953/1‑149 (MQ=255)                                                                        tCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTc                                                                     >  2:147159/1‑149 (MQ=255)                                                                          ccAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGa                                                                   <  1:144786/148‑1 (MQ=255)                                                                            aGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTc                                                                     <  5:295965/145‑1 (MQ=255)                                                                            aGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTc                                                                     >  6:295965/1‑145 (MQ=255)                                                                                cGGCCTGATCTACGCCTGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTac                                                              <  7:323522/148‑1 (MQ=255)                                                                                         cTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACa                                                                                           <  7:242392/110‑1 (MQ=255)                                                                                         cTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGCTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACa                                                                                           >  8:242392/1‑110 (MQ=255)                                                                                             gCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCAc                                                >  1:245158/1‑149 (MQ=255)                                                                                                  cgcgcAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACt                                           <  6:178953/149‑1 (MQ=255)                                                                                                   gcgcAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACTc                                          >  7:92219/1‑149 (MQ=255)                                                                                                       cgccggcgtagatcaggccgaactgcgacacatcgatcgggcgcgaAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACTCCTgg                                      <  8:157742‑M2/103‑1 (MQ=255)                                                                                                        gaagaaTATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACTCCTgg                                      <  3:191671/148‑1 (MQ=255)                                                                                                             atatCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACTCCTGGTACctc                                >  6:171740/1‑149 (MQ=255)                                                                                                              tatCGGCCCAAGCGGCCTGGTGGTGGAGATCGTGCCCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGACCGACCATGCTCGACTACAAGGTTTCCGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACTCCTGGTACctct                               >  6:142656/1‑149 (MQ=255)                                                                                                                   gCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACTCCTGGTACCTCTCTGGc                          >  6:245759/1‑149 (MQ=255)                                                                                                                    cccAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACTCCTGGTACCTCTCTGGcc                         <  8:92219/149‑1 (MQ=255)                                                                                                                      cAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTacaa                                                            <  3:321591/112‑1 (MQ=255)                                                                                                                      cAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACTCCTGGTACCTCTCTGGCCTg                       <  5:245759/149‑1 (MQ=255)                                                                                                                      cAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACATGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTacaa                                                            >  4:321591/1‑112 (MQ=255)                                                                                                                       aaGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACTCCTGGTACCTCTCTGGCCTgg                      >  7:137326/1‑149 (MQ=255)                                                                                                                             ccTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACTCCTGGTACCTCTCTGGCCTGGTCTTc                 >  7:7174/1‑148 (MQ=255)                                                                                                                              cTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACTCCTGGTACCTCTCTGGCCTGGTCTTc                 >  8:161940/1‑147 (MQ=255)                                                                                                                                 gtggtggtgATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACTCCTGGTACCTCTCTGGCCTGGTCTTCGAGTg            <  8:7174/149‑1 (MQ=255)                                                                                                                                       gtgATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACTCCTGGTACctctct                             >  5:201651/1‑126 (MQ=255)                                                                                                                                       gtgATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACTCCTGGTACctctct                             <  6:201651/126‑1 (MQ=255)                                                                                                                                        tgATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACTCCTGGTACCTCTCTGGCCTGGTCTTCGAGTGGCTGa       >  6:77345/1‑147 (MQ=255)                                                                                                                                           tCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACTCCTGGTACCTCTCTGGCCTGGTCTTCGAGTGGCTGAAagag  >  5:379346/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                           TGCCGCAAACCGGTGACGTGCCGCTGGTGGTCGATATGTCGTCCGACATCCTCTCGCGCCCGATCGATGTGTCGCAGTTCGGCCTGATCTACGCCGGCGCGCAGAAGAATATCGGCCCAAGCGGCCTGGTGGTGGTGATCGTGCGCGAAGACCTGTTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGGTTTCGGCTGACAACGGCTCGATGTACAACACCCCGGCCACCTACTCCTGGTACCTCTCTGGCCTGGTCTTCGAGTGGCTGAAAGAG  >  NC_002947/1974475‑1974761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.