New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4845076	62 (0.950)	3 (0.050)	3/254	NT	5.5%	coding (493/531 nt)	PP_4260	hypothetical protein
	?	NC_002947	= 4845104	44 (0.700)					coding (521/531 nt)	PP_4260	hypothetical protein

GGGCAGCTGGAAGACAAGGTTGACGGGCGCCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAG  >  NC_002947/4844956‑4845237                                                                                                                                                     |                                                                                                                                      gggCAGCTGGAAGACAAGGTTGACGGGCGCCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAaca                                                                                                                                       <  8:226233/149‑1 (MQ=255) gggCAGCTGGAAGACAAGGTTGACGGGCGCCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAaca                                                                                                                                       <  3:169174/149‑1 (MQ=255)  ggCAGCTGGAAGACAAGGTTGACGGGCGCCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACAc                                                                                                                                      <  4:216559‑M2/149‑2 (MQ=255)   gCAGCTGGAAGACAAGGTTGACGGGCGCCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACAcc                                                                                                                                     >  2:100576‑M2/1‑147 (MQ=255)     aGCTGGAAGACAAGGTTGACGGGCGCCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACAccaa                                                                                                                                   >  8:231948‑M2/1‑145 (MQ=255)     aGCTGGAAGACAAGGTTGACGGGCGCCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACAccaa                                                                                                                                   <  5:153538‑M2/149‑5 (MQ=255)     aGCTGGAAGACAAGGTTGACGGGCGCCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACAccaa                                                                                                                                   <  2:326664‑M2/149‑5 (MQ=255)         ggAAGACAAGGTTGACGGGCGCCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAg                                                                                                                                >  4:219148/1‑148 (MQ=255)          gAAGACAAGGTTGACGGGCGCCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTa                                                                                                                              <  1:326664/149‑1 (MQ=255)            aGACAAGGTTGACGGGCGCCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAg                                                                                                                             >  4:111828/1‑148 (MQ=255)                 aGGTTGACGGGCGCCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAacac                                                                                                                       <  1:80847/149‑1 (MQ=255)                  ggTTGACGGGCGCCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACAcc                                                                                                                      >  2:125596/1‑149 (MQ=255)                   gTTGACGGGCGCCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGGCGAACACCAACAGTAGCAACACCg                                                                                                                     <  2:384277/149‑1 (MQ=255)                             gcCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCt                                                                                                            >  5:33034/1‑148 (MQ=255)                             gcCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCt                                                                                                            <  6:33034/148‑1 (MQ=255)                              ccGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCtgt                                                                                                          <  2:59895/149‑1 (MQ=255)                              ccGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCtgt                                                                                                          <  3:216559/149‑1 (MQ=255)                                gTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTgg                                                                                                        <  5:94412/149‑1 (MQ=255)                                gTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTgg                                                                                                        <  8:37179/149‑1 (MQ=255)                                gTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTgg                                                                                                        <  7:375455/149‑1 (MQ=255)                                      tCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCgg                                                                                                  >  7:363306/1‑149 (MQ=255)                                           ctgctgGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACg                                                                                             <  7:262616/149‑1 (MQ=255)                                                gggTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCGCGCCcgc                                                                                        >  6:265543/1‑149 (MQ=255)                                                 ggTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCcgc                                                                                        >  3:362471/1‑148 (MQ=255)                                                  gTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGa                                                                                      <  2:325400/149‑1 (MQ=255)                                                    aGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAAt                                                                                    >  7:31810/1‑149 (MQ=255)                                                        aaGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCTAATCCCTGTGGGAGCGGGCACGCCCGCGATTTCGa                                                                                <  4:15109/149‑1 (MQ=255)                                                        aaGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGa                                                                                <  8:68464/149‑1 (MQ=255)                                                        aaGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCCGGAATGGGa                                                                                >  3:289472/1‑149 (MQ=255)                                                             ggCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACTGTAGCAACACCGCa                                                                                                                   <  2:395153/109‑1 (MQ=255)                                                             ggCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCa                                                                                                                   >  1:395153/1‑109 (MQ=255)                                                              gCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCggg                                                                                                 >  4:176051/1‑126 (MQ=255)                                                              gCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCggg                                                                                                 <  3:176051/126‑1 (MQ=255)                                                              gCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTc                                                                          <  6:153538/149‑1 (MQ=255)                                                               ccAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCa                                                                         <  2:138727/149‑1 (MQ=255)                                                                cAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAg                                                                        >  5:83647/1‑149 (MQ=255)                                                                        gcgcCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTGGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGt                                                                <  8:363306/149‑1 (MQ=255)                                                                           ccTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAg                                                                  <  1:200712/144‑1 (MQ=255)                                                                           ccTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAg                                                                  >  2:200712/1‑144 (MQ=255)                                                                                 cGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAg                                                        <  3:219148/148‑1 (MQ=255)                                                                                   aaGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTc                                                     >  6:369999/1‑149 (MQ=255)                                                                                               tGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTcgc                                         <  3:111828/149‑1 (MQ=255)                                                                                                 gggcATGGTGTGACCTTGGATTTGTGTTTAGAAGTACTGGAAGGCGCCGAACAGGAACAGTAGCAACACTGCAAATCGCTTTGGGAGCTGGAAAGCCCGCGAATGCGATAGCTCAGGCAAAGTTATTTCGATTTTTGACGGATTCGCgg                                       <  6:83647/147‑1 (MQ=255)                                                                                                      tGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGgcgcg                                  >  1:67367/1‑149 (MQ=255)                                                                                                        gtgtGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGgcgcgc                                 <  4:362471/148‑1 (MQ=255)                                                                                                         tgtgACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCaaa                                                                   >  7:264557/1‑113 (MQ=255)                                                                                                         tgtgACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCaaa                                                                   <  8:264557/113‑1 (MQ=255)                                                                                                         tgtgACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGccc                               <  2:67367/149‑1 (MQ=255)                                                                                                           tgACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCg                              <  3:183578/148‑1 (MQ=255)                                                                                                           tgACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGc                             <  5:369999/149‑1 (MQ=255)                                                                                                             aCCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACTCCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGa                                                                                <  4:374501/96‑1 (MQ=255)                                                                                                             aCCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGa                                                                                >  3:374501/1‑96 (MQ=255)                                                                                                              ccTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTc                           <  8:31810/148‑1 (MQ=255)                                                                                                               cTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACAccaactgcaaggtcacaccatgcgccactttttcctcttcgaacaggcgccatacctggcccccttcgctacccagcagttcgacaaaacggcgcccgtcaacctt                             >  5:264423‑M2/1‑39 (MQ=255)                                                                                                               cTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACAccaactgcaaggtcacaccatgcgccactttttcctcttcgaacaggcgccatacctggcccccttcgctacccagcagttcgacaaaacggcgcccgtcaacctt                             <  6:264423‑M2/145‑107 (MQ=255)                                                                                                                        gggTGACGAAGCCCTGCAAGGCGCCGAACAccaactgcaaggtcacaccatgcgccactttttcctcttcgaacaggcgccatacctggcccccttcgctacccagcagttcgacaaaacggcgcccgtcaaccttgtcttccagctgc                <  3:7504‑M2/149‑120 (MQ=255)                                                                                                                                      tGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCGCAGGCATAGGTATTTGCAGGTGTGACGCATTCGCGGGCGCGCCCGCTCCCCCAGGGGGTGCTATCTGCCGGAg  >  8:315925/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                      GGGCAGCTGGAAGACAAGGTTGACGGGCGCCGTTTTGTCGAACTGCTGGGTAGCGAAGGGGGCCAGGTATGGCGCCTGTTCGAAGAGGAAAAAGTGGCGCATGGTGTGACCTTGCAGTTGGGTGACGAAGCCCTGCAAGGCGCCGAACACCAACAGTAGCAACACCGCAAATCCCTGTGGGAGCGGGCACGCCCGCGAATGCGATAGCTCAGGCAAAGGTATTTCCAGGTCTGACGCATTCGCGGGCGCGCCCGCTCCCACAGGGTTTCCTATCTGCCTGAG  >  NC_002947/4844956‑4845237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.