New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5555200 =73 (1.120)6 (0.100) 5/246 NT 8.4% coding (325/459 nt) PP_4887 hypothetical protein
?NC_002947 5555263 = 63 (1.040)coding (262/459 nt) PP_4887 hypothetical protein

CGGCAGCATGTACAACCGGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCC  >  NC_002947/5555117‑5555408
                                                                                                                                                  |                                                                                                                                                  
cGGCAGCATGTACAACCGGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCA‑‑GCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACa                                                                                                                                                <  2:80418/149‑1 (MQ=255)
cGGCAGCATGTACAACCGGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGACCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAACTCAGAACCAGCTGCTGGACGCTGATGGTCTCGa                                                                                                                                                  >  7:367347/1‑149 (MQ=255)
  gcagcaTGTACAACCGGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGa                                                                                                                                                  >  7:45534/1‑147 (MQ=255)
  gcagcaTGTACAACCGGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACa                                                                                                                                                <  5:144348/149‑1 (MQ=255)
           tcAACCTGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGaagaag                                                                                                                                       <  5:5494/148‑1 (MQ=255)
           aCAACCGGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTgaagaa                                                                                                                                        <  3:280822/148‑1 (MQ=255)
           aCAACCGGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTgaagaa                                                                                                                                        <  7:69441/148‑1 (MQ=255)
             aaCCGGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGAc                                                                                                                                                 >  6:198037/1‑137 (MQ=255)
             aaCCGGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGAc                                                                                                                                                 <  5:198037/137‑1 (MQ=255)
             aaCCGGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTgaagaa                                                                                                                                        <  6:192627/146‑1 (MQ=255)
             aaCCGGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTgaagaa                                                                                                                                        >  5:192627/1‑146 (MQ=255)
             aaCCGGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGcagaag                                                                                                                                       >  6:5494/1‑147 (MQ=255)
             aaCCGGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTc                                                                                                                                     >  2:71342/1‑149 (MQ=255)
             aaCCGGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTc                                                                                                                                     >  7:279132/1‑149 (MQ=255)
              aCCGGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTcc                                                                                                                                    <  8:279132/149‑1 (MQ=255)
              aCCGGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTcc                                                                                                                                    <  1:107155/149‑1 (MQ=255)
                cGGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAg                                                                                                                                  <  2:314031/149‑1 (MQ=255)
                       aaGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCa                                                                                                                           >  4:117673/1‑149 (MQ=255)
                        aGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCAc                                                                                                                          <  1:395299/149‑1 (MQ=255)
                         gTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCAcc                                                                                                                         <  6:362561/149‑1 (MQ=255)
                          tATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCCGGCGCTCAcc                                                                                                                         >  4:58261/1‑148 (MQ=255)
                          tATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGAACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGAGCTCAcc                                                                                                                         >  7:372382/1‑148 (MQ=255)
                            ttGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGAc                                                                                                                      <  2:257959/149‑1 (MQ=255)
                                   acaGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTgg                                                                                                               >  1:276840/1‑148 (MQ=255)
                                   acaGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTgg                                                                                                               >  2:153534/1‑148 (MQ=255)
                                     aGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGcac                                                                                                            <  7:280580/149‑1 (MQ=255)
                                      gCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGcaca                                                                                                           <  5:13493/149‑1 (MQ=255)
                                      gCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGcaca                                                                                                           >  2:334143/1‑149 (MQ=255)
                                       cACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACAt                                                                                                          >  4:378108/1‑149 (MQ=255)
                                           gATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCAt                                                                                                      <  7:157460/149‑1 (MQ=255)
                                            aTGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCAtt                                                                                                     >  6:301704/1‑149 (MQ=255)
                                             tgtgGGCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTg                                                                                                    <  2:83017/149‑1 (MQ=255)
                                               tgGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGa                                                                                                  <  6:310490/149‑1 (MQ=255)
                                                      gCTTAAGCTTTTCCCGTACACATCGATGCAGACCATCTCCGCCAAGTGGGTGTCGCGCTAAGTCAGCAGCAGCTGCTGGTCGCTGATGGTCTCGTCAGTGAAGAAGTCCAGGCGCTCACCGACGGCTTGCACATGCATTGGATcgccgc                                                                                           <  8:367347/149‑1 (MQ=255)
                                                          aaGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGAATTGGATCGCCGCGAGt                                                                                       >  7:334806/1‑149 (MQ=255)
                                                               ttGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGc                                                                                  >  3:288155/1‑149 (MQ=255)
                                                                  cccGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGt                                                                               <  2:276840/149‑1 (MQ=255)
                                                                  cccGAACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGAAGGTCTCGACAGTGAAGAAGTCCAGGCGCCCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGt                                                                               <  7:149010/149‑1 (MQ=255)
                                                                    cGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTg                                                                              <  1:71342/149‑1 (MQ=255)
                                                                     gTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGa                                                                            >  4:103641/1‑149 (MQ=255)
                                                                       acacATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGata                                                                          >  8:229939/1‑149 (MQ=255)
                                                                        cacaTCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGatat                                                                         >  2:292488/1‑149 (MQ=255)
                                                                         acaTCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATc                                                                        <  3:335060/149‑1 (MQ=255)
                                                                           aTCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCgg                                                                      >  3:25163/1‑149 (MQ=255)
                                                                           aTCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCgg                                                                      >  7:28675/1‑149 (MQ=255)
                                                                              cATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGa                                                                   <  7:229939/149‑1 (MQ=255)
                                                                                   AGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACAtt                                                               <  7:386227‑M1/148‑1 (MQ=255)
                                                                                    gaccatcagcgaccagcagctggtgctgacttcgcgcgacacgcacttggcggtgatggtctCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTg                                                              >  6:341247‑M2/63‑148 (MQ=255)
                                                                                    gaccatcagcgaccagcagctggtgctgacttcgcgcgacacgcacttggcggtgatggtctCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTg                                                              >  4:33280‑M2/63‑148 (MQ=255)
                                                                                    GACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACAt                                                                                                          >  6:327966‑M1/1‑104 (MQ=255)
                                                                                    GACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACAt                                                                                                          <  5:327966‑M1/104‑1 (MQ=255)
                                                                                    GACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACAt                                                                                                          <  8:246690‑M1/104‑1 (MQ=255)
                                                                                    GACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACAt                                                                                                          >  7:246690‑M1/1‑104 (MQ=255)
                                                                                     ACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGAc                                                                  >  1:294662‑M1/1‑143 (MQ=255)
                                                                                     ACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGAc                                                                  <  2:294662‑M1/143‑1 (MQ=255)
                                                                                      ccatcagcgaccagcagctggtgctgacttcgcgcgacacgcacttggcggtgatggtctCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGaaa                                                           >  3:389150‑M2/61‑149 (MQ=255)
                                                                                      CCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGTACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGaaa                                                           >  8:372382‑M1/1‑149 (MQ=255)
                                                                                       CATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAAc                                                          <  2:313159‑M1/149‑1 (MQ=255)
                                                                                         TCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACgg                                                        <  1:154183‑M1/149‑1 (MQ=255)
                                                                                          tcagcgaccagcagctggtctgacttcgcgcgacacgcacttggcggtgatggtctCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGc                                                       >  2:378715‑M2/57‑149 (MQ=255)
                                                                                            ccGCCAAGTGCTTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTATCGACAGTGAAGAAGTCAAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGCAGCCGTGGATATCGGGTACTTTTAAACGGGGt                                                     >  6:283437/1‑149 (MQ=255)
                                                                                             cGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATcgccgc                                                                                           <  1:35724/110‑1 (MQ=255)
                                                                                             cGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATcgccgc                                                                                           >  2:35724/1‑110 (MQ=255)
                                                                                               ccAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGt                                                     >  4:249498/1‑146 (MQ=255)
                                                                                               ccAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTgag                                                  <  5:82224/149‑1 (MQ=255)
                                                                                                  aGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATa                                               <  8:386227/149‑1 (MQ=255)
                                                                                                   gTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATaa                                              <  5:301704/149‑1 (MQ=255)
                                                                                                          tCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTcgc                                        <  1:313159/148‑1 (MQ=255)
                                                                                                          tCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTcgc                                        <  2:154183/148‑1 (MQ=255)
                                                                                                              gcgAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATg                                   >  1:137553/1‑149 (MQ=255)
                                                                                                              gcgAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTAACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGAGACATTGAAACGGCGTGAGATAAAGTCGCGAATg                                   >  2:67072/1‑149 (MQ=255)
                                                                                                                gAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCg                                 <  3:249498/149‑1 (MQ=255)
                                                                                                                acttcgcgcgacacgcacttggcggtgatggtctCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGc                                  <  3:33280‑M2/114‑1 (MQ=255)
                                                                                                                  aGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGa                               <  3:117673/149‑1 (MQ=255)
                                                                                                                    tCAGCACCAGCTGCTGGTCGCTGATGGTCTCGATAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAg                             <  8:45534/149‑1 (MQ=255)
                                                                                                                    tCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAg                             >  6:326012/1‑149 (MQ=255)
                                                                                                                    cgcgcgacacgcacttggcggtgatggtctCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGaa                              <  5:341247‑M2/118‑1 (MQ=255)
                                                                                                                      aGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGaa                              <  8:379801/146‑1 (MQ=255)
                                                                                                                      aGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGaa                              >  7:379801/1‑146 (MQ=255)
                                                                                                                        cACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGccc                         <  1:292488/149‑1 (MQ=255)
                                                                                                                              ctgctgGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGCAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGgcca                   <  5:283437/149‑1 (MQ=255)
                                                                                                                              ctgctgGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGgcca                   <  8:28675/149‑1 (MQ=255)
                                                                                                                                 ctgGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGgccagc                 <  3:378108/148‑1 (MQ=255)
                                                                                                                                 ctgGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGgccagc                 >  6:28426/1‑148 (MQ=255)
                                                                                                                                   ggTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGccagccag              >  6:47135/1‑149 (MQ=255)
                                                                                                                                    gTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATCCGGAAGGCCCGGGCcagccagc             >  2:211555/1‑149 (MQ=255)
                                                                                                                                      cGCTGATGGTCTCGACAGTGAAGAAGTCAAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGGCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCg           <  5:348577/149‑1 (MQ=255)
                                                                                                                                       gCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCgg          >  6:352292/1‑149 (MQ=255)
                                                                                                                                        cTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTcgc                                        >  4:103208/1‑118 (MQ=255)
                                                                                                                                        cTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTcgc                                        <  3:103208/118‑1 (MQ=255)
                                                                                                                                         tgatggtctCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAg                             >  5:163168‑M2/10‑128 (MQ=255)
                                                                                                                                         tgatggtctCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAg                             <  6:163168‑M2/119‑1 (MQ=255)
                                                                                                                                          gatggtctCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATAGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGa       >  8:320083‑M2/9‑149 (MQ=255)
                                                                                                                                              gtctCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATa                                               <  3:355610‑M2/101‑1 (MQ=255)
                                                                                                                                              gtctCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATa                                               >  4:355610‑M2/5‑105 (MQ=255)
                                                                                                                                               tctCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTcc  >  5:396589‑M2/4‑149 (MQ=255)
                                                                                                                                                 tCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTcc  >  8:308610‑M2/2‑147 (MQ=255)
                                                                                                                                                  |                                                                                                                                                  
CGGCAGCATGTACAACCGGCCAAAAGTATTGAGGCACAGCACCGATGTGGTCACGCTTAAGCTTTGCCCGTACACATCCATGCAGACCATCACCGCCAAGTGCGTGTCGCGCGAAGTCAGCACCAGCTGCTGGTCGCTGATGGTCTCGACAGTGAAGAAGTCCAGGCGCTCACCGACGGCTGGCACATGCATTGGATCGCCGCGAGTGAAGCCGTGGATATCGGCGACATTGAAACGGCGTGAGATAAAGTCGCGAATGCGGAAGGCCCGGGCCAGCCAGCCGGGGACGTCC  >  NC_002947/5555117‑5555408

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.