New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4272 =	61 (1.130)	4 (0.080)	4/254	NT	5.9%	coding (110/1896 nt)	trmF	tRNA uridine 5‑carboxymethylaminomethyl modification protein
	?	NC_002947	4308 =	68 (1.290)					coding (74/1896 nt)	trmF	tRNA uridine 5‑carboxymethylaminomethyl modification protein

CGCTTACCTTCTCTATTCGCAAAAACAGGCACGAGGTGCGTGGTGGATTTCCCTTCCCGTTTTGACGTGATCGTCATCGGCGGCGGCCATGCCGGTACCGAGGCTGCGCTTGCGTCTGCACGCATGGGTGTGAAAACCCTGCTGCTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4420‑4272 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacGCAAGCGCAGCCTCGGTACCGGCATGGCCGCCGCCGATGACGATCACGTCAAAACGGGAAGGGAAATCCACCACGCACCTCGTGCCTGTTTTTGCGAATAGAGAAGGTAAGCGGACAAGTATAGGGACTTCCCCCCCAGTAAAGAAAC  >  NC_002947/4308‑4455                                                                                                                                                                                                                                                                                                           CGCTTACCTTCTCTATTCGCAAAAACAGGCACGAGGTGCGTGGTGGATTTCCCTTCCCGTTTTGACGTGATCGTCATCGGCGGCGGCCATGCCGGTACCGAGGCTGCGCTTGCGTCTGCACGCATGGGTGTGAAAACCCTGCTGCTGAC                                                                                                                                                      <  5:17876/149‑1                                                                                                             CTTGCGTCTGCACGCATGGGTGTGAAAACCCTGCTGCTGACGCAAGCGCAGCCTCGGTACCGGCATGGCCGCCGCCGATGACGATCACGTCAAAACGGGAAGGGAAATCCACCACGCACCTCGTGCCTGTTT                                                           >  3:40120/1‑132                                                                                                             CTTGCGTCTGCACGCATGGGTGTGAAAACCCTGCTGCTGACGCAAGCGCAGCCTCGGTACCGGCATGGCCGCCGCCGATGACGATCACGTCAAAACGGGAAGGGAAATCCACCACGCACCTCGTGCCTGTTT                                                           <  4:40120/132‑1                                                                                                                  GTCTGCACGCATGGGTGTGAAAACCCTGCTGCTGACGCAAGCGCAGCCTCGGTACCGGCATGGCCGCCGCCGATGACGATCACGTCAAAACGGGAAGGGAAATCCACCACGCACCTCGTGCCTGTTTTTGCGAATAGAGAA                                             <  5:89648/141‑1                                                                                                                  GTCTGCACGCATGGGTGTGAAAACCCTGCTGCTGACGCAAGCGCAGCCTCGGTACCGGCATGGCCGCCGCCGATGACGATCACGTCAAAACGGGAAGGGAAATCCACCACGCACCTCGTGCCTGTTTTTGCGAATAGAGAA                                             >  6:89648/1‑141                                                                                                                                                     CGCAAGCGCAGCCTCGGTACCGGCATGGCCGCCGCCGATGACGATCACGTCAAAACGGGAAGGGAAATCCACCACGCACCTCGTGCCTGTTTTTGCGAATAGAGAAGGTAAGCGGACAAGTATAGGGACTTCCCCCCCAGTAAAGAAAC  <  5:134937/149‑1                                                                                                                                                                                                                                                                                                           CGCTTACCTTCTCTATTCGCAAAAACAGGCACGAGGTGCGTGGTGGATTTCCCTTCCCGTTTTGACGTGATCGTCATCGGCGGCGGCCATGCCGGTACCGAGGCTGCGCTTGCGTCTGCACGCATGGGTGTGAAAACCCTGCTGCTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4420‑4272 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacGCAAGCGCAGCCTCGGTACCGGCATGGCCGCCGCCGATGACGATCACGTCAAAACGGGAAGGGAAATCCACCACGCACCTCGTGCCTGTTTTTGCGAATAGAGAAGGTAAGCGGACAAGTATAGGGACTTCCCCCCCAGTAAAGAAAC  >  NC_002947/4308‑4455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.