New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	403251 =	68 (1.260)	4 (0.080)	4/230	NT	9.1%	intergenic (‑54/+115)	msrA/PP_0337	peptide methionine sulfoxide reductase MsrA/sensory box protein
	?	NC_002947	= 5162580	20 (0.420)					intergenic (+103/+98)	PP_4544/PP_4545	hypothetical protein/beta‑ketodecanoyl‑ACP synthase

AACTGGCCGAGCGGCTGAAGCGCTATCCGCGTGGCCCGGTGGCCTGACAGCTGCGTAATCCTCGGGCACTATAGAAGCCATTCGGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/403412‑403251 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcaAGCCCGCGAAGGGGCCGGCGCATTTCACACAGACAAAAAGAAGCGGGAAACGCCGGATGGGGTCGGCGTTTCCCGCTTCAGGTGAAGCAGAGCAGGGTGTTGCTTAGAACTTGGCTTCCAGGTCTACCTGCAGGGTGT  <  NC_002947/5162580‑5162443                                                                                                                                                                                                                                                                                                              AACTGGCCGAGCGGCTGAAGCGCTATCCGCGTGGCCCGGTGGCCTGACAGCTGCGTAATCCTCGGGCACTATAGAAGCCATTCGGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCT                                                                                                                                                         >  7:163827/1‑149        CGAGCGGCTGAAGCGCTATCCGCGTGGCCCGGTGGCCTGACAGCTGCGTAATCCTCGGGCACTATAGAAGCCATTCGGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGAACCCCACCACCTTTGAAACCTGTGCTGTACCTGTGGGcg                                                                                                                                                  >  3:44668/1‑147        CGAGCGGCTGAAGCGCTATCCGCGTGGCCCGGTGGCCTGACAGCTGCGTAATCCTCGGGCACTATAGAAGCCATTCGGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAG                                                                                                                                                  >  6:135601/1‑149         GAGCGGCTGAAGCGCTATCCGCGTGGCCCGGTGGCCTGACAGCTGCGTAATCCTCGGGCACTATAGAAGCCATTCGGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGC                                                                                                                                                 >  1:212245/1‑149                TGAAGCGCTATCCGCGTGGCCCGGTGGCCTGACAGCTGCGTAATCCTCGGGCACTATAGAAGCCATTCGGGCCCTTTCGCGGGCACCCCCCCAACCCCAGGAACACCACAACCATTTAAAACAGTTCTGTACCAGTGGGAGCGGGCAAG                                                                                                                                          >  4:313227/1‑149                                  GCCCGGTGGCCTGACAGCTGCGTAATCCTCGGGCACTATAGAAGCCATTCGGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGG                                                                                                                                                     <  5:279141/120‑1                                  GCCCGGTGGCCTGACAGCTGCGTAATCCTCGGGCACTATAGAAGCCATTCGGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGG                                                                                                                                                     >  6:279141/1‑120                                                                                                            TCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGCGCATTTCACACAGACAAAAAGAAGCGGGAAACGCCGGATGGGGTCGGCGTTT                                                                     >  7:198922/1‑126                                                                                                            TCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGCGCATTTCACACAGACAAAAAGAAGCGGGAAACGCCGGATGGGGTCGGCGTTT                                                                     <  8:198922/126‑1                                                                                                              CCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGGGGCCGGCGCATTTCACACAGACAAAAAGAAGCGGGAAACGCCGGATGGGGTCGGCGTTTCCCGCTTCAGGTGAAGCAGAGCAGG                                            >  5:333499/1‑149                                                                                                                                    gtcaaCTGTTCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGGGGCCGGCGCATTTCACACAGACAAAAAGAAGCGGGAAACGCCGGATGGGGTCGGCGTTTCCCGCTTCAGGTGAAGCAGAGCAGGGTGTTGCTTAGAACTTGGCT                        <  6:333499/142‑1                                                                                                                                                        GGGAGCGGGCAAGCCCGCGAAGGGGCCGGCGCATTTCACACAGACAAAAAGAAGCGGGAAACGCCGGATGGGGTCGGCGTTTCCCGCTTCAGGTGAAGCAGAGCAGGGTGTTGCTTAGAACTTGGCTTCCAGGTCTACCTGCAGGGTGT  <  1:260024/149‑1                                                                                                                                                         GGAGCGGGCAAGCCCGCGAAGGGGCCGGCGCATTTCACACAGACAAAAAGAAGCGGGAAACGCCGGATGGGGTCGGCGTTTCCCGCTTCAGGTGAAGCAGAGCAGGGTGTTGCTTAG                                 <  5:75422/117‑1                                                                                                                                                         GGAGCGGGCAAGCCCGCGAAGGGGCCGGCGCATTTCACACAGACAAAAAGAAGCGGGAAACGCCGGATGGGGTCGGCGTTTCCCGCTTCAGGTGAAGCAGAGCAGGGTGTTGCTTAG                                 >  6:75422/1‑117                                                                                                                                                         GGAGCGGGCAAGCCCGCGAAGGGGCCGGCGCATTTCACACAGACAAAAAGAAGCGGGAAACGCCGGATGGGGTCGGCGTTTCCCGCTTCAGGTGAAGCAGA                                                 <  1:52355/101‑1                                                                                                                                                         GGAGCGGGCAAGCCCGCGAAGGGGCCGGCGCATTTCACACAGACAAAAAGAAGCGGGAAACGCCGGATGGGGTCGGCGTTTCCCGCTTCAGGTGAAGCAGA                                                 >  2:52355/1‑101                                                                                                                                                                                                                                                                                                              AACTGGCCGAGCGGCTGAAGCGCTATCCGCGTGGCCCGGTGGCCTGACAGCTGCGTAATCCTCGGGCACTATAGAAGCCATTCGGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGAACACCACAACCTTTGAAACCTGTGCTGTACCTGTGGGAGCGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/403412‑403251 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcaAGCCCGCGAAGGGGCCGGCGCATTTCACACAGACAAAAAGAAGCGGGAAACGCCGGATGGGGTCGGCGTTTCCCGCTTCAGGTGAAGCAGAGCAGGGTGTTGCTTAGAACTTGGCTTCCAGGTCTACCTGCAGGGTGT  <  NC_002947/5162580‑5162443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.