| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 403251 = | 68 (1.260) | 4 (0.080) | 4/230 | NT | 9.1% | intergenic (‑54/+115) | msrA/PP_0337 | peptide methionine sulfoxide reductase MsrA/sensory box protein |
| ? | NC_002947 | = 5162580 | 20 (0.420) | intergenic (+103/+98) | PP_4544/PP_4545 | hypothetical protein/beta‑ketodecanoyl‑ACP synthase | |||||
GTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACG > NC_002947/5162439‑5162727 | gTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCCACCGGCGGTTGCCGGGTGGTTTTGTGGGTGTGAAATGCGCCGGCCCCATAGCGGGCATTcccc > 1:292380/1‑147 (MQ=255)gTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAAAGCCGCCCCCCACCCGCGGTTGCCGCGTCGTTTTGTGTGTGTGGAATTCGCCCGCCCCCTCGCGGGCGTGcccc > 3:316741/1‑147 (MQ=255) acacCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTtgcccgctccc < 1:260024‑M2/149‑12 (MQ=255) ccTGGAAGCCAAGTTCTAAGCAACACCCTCCTCTGCTACACCCGAAGCGGGAAACGCCGCCCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGa < 7:113711/149‑1 (MQ=255) aGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTtgcccgctcccacaggtacagaacagttgac < 6:333499‑M2/147‑32 (MQ=255) aaGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGCCCCCATCCGGCGTTTCCCGCGTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCATAGCGGGCTTGCCCGCACCCACACTATAACCACAGACCATGAGaa > 2:108055/1‑148 (MQ=255) cTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTtgcccgctcc > 6:75422‑M2/1‑107 (MQ=255) cTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTtgcccgctcc < 5:75422‑M2/117‑11 (MQ=255) cTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACtgtg < 1:126532/148‑1 (MQ=255) aGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCt < 2:98299/147‑1 (MQ=255) ccTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTtgcccgctcccacaggtacagcacagttctcaaggtctgtggtgatactgtgg > 5:333499‑M2/1‑96 (MQ=255) ccTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTgg < 7:35320/149‑1 (MQ=255) ctctgctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGc < 4:316741/149‑1 (MQ=255) ctctgctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGc < 2:260024/149‑1 (MQ=255) tctgctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTtgcccgctcc > 2:52355‑M2/1‑91 (MQ=255) tctgctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTtgcccgctcc < 1:52355‑M2/101‑11 (MQ=255) tctgctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATcacc < 3:210240/113‑1 (MQ=255) ctTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCggg < 2:292380/147‑1 (MQ=255) cTGAAGCGGGAAACGCCGACCCCATCCTGGGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACAACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCcg < 4:199610/149‑1 (MQ=255) gCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCgg < 1:191550/135‑1 (MQ=255) gCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCgg > 2:191550/1‑135 (MQ=255) aaaCGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCTCTTCGCGGGCTtgcccgctcccacaggtacagcacagttctcaaggtctgtggtgatactgtggga > 7:198922‑M2/1‑71 (MQ=255) aaaCGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCTCTTCGCGGGCTtgcccgctcccacaggtacagcacagttctcaaggtctgtggtgatactgtggga < 8:198922‑M2/126‑56 (MQ=255) aaaCGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCGACCACAGTATCACCCCAGACCGTGAGAAGGGTGCGGGTCCGGTGGGAGCGGGGAAGCCCGCGGAGAgggc > 2:232436/1‑147 (MQ=255) gcccccATCCGGCGTTCCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCCGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTTCCCCCACAGACTTTGAGAACTGTGGTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACat < 8:149707/147‑2 (MQ=37) cATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCCCTACCACAGTATAACCACAGAACTTGAGAAATGTGGTGTTCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAAAAGGCGcc > 5:141501/1‑149 (MQ=38) tGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGa < 4:225939/148‑1 (MQ=255) tgttAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATcac < 6:141501/147‑1 (MQ=255) tgtgAAATCCGCCGGCCCCTTCGCGGGCTGGCCCGCTCCCACAGTAGCACCACAGACCTTGACACCTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATcaca < 3:49109/148‑1 (MQ=37) ccgatctcccgTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGATCTGTGCTGTACCTGTGGTAGGGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATc < 5:316530/142‑1 (MQ=38) ccGGCCCCTTCGCGGGCTTGCCCGCACCCACAGAATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGaa < 1:297808/149‑1 (MQ=255) cTtgcccgctcccactggtacagaactgttttaaatggttgtggtgttcctggggttgggggggtgcccgcgaaagggcccgaatggcttctatagtgcccgaggattacgcagctgtcaggccaccgggccacgcggatagcgcttca > 4:313227‑M2/1‑2 (MQ=255) | GTCGACACCCTGCAGGTAGACCTGGAAGCCAAGTTCTAAGCAACACCCTGCTCTGCTTCACCTGAAGCGGGAAACGCCGACCCCATCCGGCGTTTCCCGCTTCTTTTTGTCTGTGTGAAATGCGCCGGCCCCTTCGCGGGCTTGCCCGCTCCCACAGTATCACCACAGACCTTGAGAACTGTGCTGTACCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGTAACAGGCGCCTGATGAATCAGCGCTTGCGCAGAATCACACTACCAATCGAATACCCCGCACCAAACG > NC_002947/5162439‑5162727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |