New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 487574 = | 66 (1.220) | 5 (0.100) | 5/246 | NT | 7.7% | coding (728/990 nt) | pdxA | 4‑hydroxythreonine‑4‑phosphate dehydrogenase |
? | NC_002947 | 487613 = | 57 (1.110) | coding (689/990 nt) | pdxA | 4‑hydroxythreonine‑4‑phosphate dehydrogenase |
GACAAGTTTGGCATTGCCAACCCGCGTATCCTCGTGTGCGGCCTCAACCCGCATGCGGGCGAGGGCGGCCACCTGGGCCGCGAAGAAATCGACATCATCGAGCCGACCCTGGCCCGCCTGCGCACCGAAGGCATGGACCTGC‑‑‑‑GCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/487722‑487574 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggccAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGTCGCGCATGTCGGCATGCAGGATACGGGTTACACGTTCG > NC_002947/487613‑487759 GACAAGTTTGGCATTGCCAACCCGCGTATCCTCGTGTGCGGCCTCAACCCGCATGCGGGCGAGGGCGGCCACCTGGGCCGCGAAGAAATCGACATCATCGAGCCGACCCTGGCCCGCCTGCGCACCGAAGGCATGGACCTGC‑‑‑‑GCGGGCC > 5:220690/1‑149 CAACCCGCGTATCCTCGTGTGCGGCCTCAACCCGCATGCGGGCGAGGGCGGCCACCTGGGCCGCGAAGAAATCGACATCATCGAGCCGACCCTGGCCCGCCTGCGCACCGAAGGCATGGACCTGC‑‑‑‑GCGGGCC > 3:67616/1‑132 CAACCCGCGTATCCTCGTGTGCGGCCTCAACCCGCATGCGGGCGAGGGCGGCCACCTGGGCCGCGAAGAAATCGACATCATCGAGCCGACCCTGGCCCGCCTGCGCACCGAAGGCATGGACCTGC‑‑‑‑GCGGGCC < 4:67616/132‑1 CCGCATGCGGGCGAGGGCGGCCACCTGGGCCGCGAAGAAATCGACATCATCGAGCCGACCCTGGCCCGCCTGCGCACCGAAGGCATGGACCTGC‑‑‑‑GCGGGC < 5:150631/100‑1 CCGCATGCGGGCGAGGGCGGCCACCTGGGCCGCGAAGAAATCGACATCATCGAGCCGACCCTGGCCCGCCTGCGCACCGAAGGCATGGACCTGC‑‑‑‑GCGGGC > 6:150631/1‑100 CCTGGCCCGCCTGCGCACCGAAGGCATGGACCTGC‑‑‑‑GCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGC > 3:67343/1‑115 CCTGGCCCGCCTGCGCACCGAAGGCATGGACCTGC‑‑‑‑GCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGC < 4:67343/115‑1 CCCGCCTGCGCACCGAAGGCATGGACCTGC‑‑‑‑GCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGTCGC > 4:273780/1‑149 CCGCCTGCGCACCGAAGGCATGGACCTGCGCGGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGC < 5:325217/127‑1 CCGCCTGCGCACCGAAGGCATGGACCTGCGCGGGCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGC > 6:325217/1‑127 GCGGGCCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGCATACGCGGGTTGGCAATGCCAAACTTGTCGCGCATGTCGGCATGCAGGATACGGGTTAAAC > 6:225022/1‑149 CCAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGTCGCGCATGTCGGCATGCAGGATACGGGTTACACGTTCG < 3:207229/149‑1 CAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGG > 5:126282/1‑64 CAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGG < 6:126282/64‑1 GACAAGTTTGGCATTGCCAACCCGCGTATCCTCGTGTGCGGCCTCAACCCGCATGCGGGCGAGGGCGGCCACCTGGGCCGCGAAGAAATCGACATCATCGAGCCGACCCTGGCCCGCCTGCGCACCGAAGGCATGGACCTGC‑‑‑‑GCGGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/487722‑487574 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggccAGGGTCGGCTCGATGATGTCGATTTCTTCGCGGCCCAGGTGGCCGCCCTCGCCCGCATGCGGGTTGAGGCCGCACACGAGGATACGCGGGTTGGCAATGCCAAACTTGTCGCGCATGTCGGCATGCAGGATACGGGTTACACGTTCG > NC_002947/487613‑487759 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |