New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 563101	62 (1.150)	4 (0.080)	4/250	NT	6.2%	coding (184/1002 nt)	rpoA	DNA‑directed RNA polymerase subunit alpha
	?	NC_002947	= 563125	62 (1.190)					coding (208/1002 nt)	rpoA	DNA‑directed RNA polymerase subunit alpha

TCCGACCCGCGCCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/562977‑563101 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcg‑CGGAGTACTCATGGAGTACGCCATCGATCTCG  <  NC_002947/563125‑563094                                                                                                                                                                TCCGACCCGCGCCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTTGGCAACGCGGTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCATGGAGTACGCCA           <  8:306591/149‑1         GCGCCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCG‑CGGAGTACTCATGGAGTACGCCATCGATCTCG  <  7:295829/149‑1                                                                                     GTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCG‑CGGAGTACTCATGGAGTACGCCATCGATC     >  1:165350/1‑70                                                                                     GTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCG‑CGGAGTACTCATGGAGTACGCCATCGATC     <  2:165350/70‑1                                                                                                                                                                TCCGACCCGCGCCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/562977‑563101 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcg‑CGGAGTACTCATGGAGTACGCCATCGATCTCG  <  NC_002947/563125‑563094

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.