New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 563101	62 (1.150)	4 (0.080)	4/250	NT	6.2%	coding (184/1002 nt)	rpoA	DNA‑directed RNA polymerase subunit alpha
	?	NC_002947	= 563125	62 (1.190)					coding (208/1002 nt)	rpoA	DNA‑directed RNA polymerase subunit alpha

ATTGATGTGCAGGTAGTCAGTCCGACCCGCGCCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGAAGTTACGCTGACCTTGTCGAAAAAGGGTTCGGGGGTGGT  >  NC_002947/562957‑563246                                                                                                                                                 |                                                                                                                                                  aTTGATGTGCAGGTAGTCAGTCCGCCCCGCGCCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATgg                                                                                                                                               >  7:226618/1‑149 (MQ=255)      tgtgCAGTTAGTCAGTCCGACCAGCGCCAATATTACGCTAGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTACATGCCTGGCTGTGTTGTAGTCGAGGCCGAGATCGATGGCGTa                                                                                                                                           <  2:88991/148‑1 (MQ=255)       gtgCAGGTAGTCAGTCCGACCCGCGCCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACt                                                                                                                                         >  6:56339/1‑149 (MQ=255)          cAGGTAGTCAGTCCGACCCGCGCCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCa                                                                                                                                      >  6:28648/1‑149 (MQ=255)           aGGTAGTCAGTCCGACCCGCGCCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCAt                                                                                                                                     <  7:296704/149‑1 (MQ=255)            ggTAGTCAGTCCGACCCGCGCCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCATGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATg                                                                                                                                    <  6:255360/149‑1 (MQ=255)             gTAGTCAGTCCGACCCGCGCCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGa                                                                                                                                   <  5:252429/149‑1 (MQ=255)                 tcagtcCGACCCGCGCCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTAc                                                                                                                               >  5:170172/1‑149 (MQ=255)                   agtcCGACCCGCGCCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTc                                                                                                                             >  8:176633/1‑149 (MQ=255)                     tcCGACCCGCGCCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTTGGCAACGCGGTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGatggcgtactcatggagtacgcca                                                                                                                           <  8:306591‑M1/149‑25 (MQ=255)                             gcgcCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGcggagtactcatggagtacgccatcgatctcg                                                                                                                   <  7:295829‑M1/149‑33 (MQ=255)                             gcgcCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCg                                                                                                                     >  8:131141/1‑147 (MQ=255)                              cgcCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAg                                                                                                                  <  7:166719/149‑1 (MQ=255)                              cgcCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAg                                                                                                                  <  8:93817/149‑1 (MQ=255)                                ccAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGgt                                                                                                                <  4:123266/149‑1 (MQ=255)                                  aaaaTTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGgtgt                                                                                                              >  8:87954/1‑149 (MQ=255)                                      ttACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAg                                                                                                          >  3:278861/1‑149 (MQ=255)                                      ttACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAg                                                                                                          <  1:132988/149‑1 (MQ=255)                                      ttACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAg                                                                                                          <  5:168486/149‑1 (MQ=255)                                      ttACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAg                                                                                                          >  4:211525/1‑149 (MQ=255)                                       caCGCTCGAGAGGCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAg                                                                                                          >  5:350422/2‑148 (MQ=255)                                         cGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGaa                                                                                                       <  7:176633/149‑1 (MQ=255)                                          gCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAgg                                                                                                         >  2:79611/1‑146 (MQ=255)                                            tCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGAc                                                                                                    >  4:129905/1‑149 (MQ=255)                                              gAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGAc                                                                                                    <  5:28648/147‑1 (MQ=255)                                              gAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGAc                                                                                                    <  5:56339/147‑1 (MQ=255)                                                gCCTCTCGAGCGTGTTTTAGGCCATCCCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTaa                                                                                                <  3:198327/149‑1 (MQ=255)                                                  ctctCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAAtt                                                                                              >  6:173700/1‑149 (MQ=255)                                                    ctcGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTg                                                                                             >  3:143580/1‑148 (MQ=255)                                                      cGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGgt                                                                                                                <  6:129643/127‑1 (MQ=255)                                                      cGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGgt                                                                                                                >  5:129643/1‑127 (MQ=255)                                                                 tCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGaa                                                                                <  6:350422/148‑1 (MQ=255)                                                                   ggCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGGAGTAGTCGAGGCCGAGATCGATGGCGTACTCCTTGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAAcc                                                                              <  7:14601/148‑1 (MQ=255)                                                                     ccATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGtt                                                                                                             <  2:291596/115‑1 (MQ=255)                                                                       aTACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGaaa                                                                         <  6:170172/149‑1 (MQ=255)                                                                       aTACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGaaa                                                                         <  4:143580/149‑1 (MQ=255)                                                                        ttcccTGGGGAACGCGCTGCGCCGCATCCTTTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGTCCTAGATCGATGGCGTACTCCATGAGTACTCAGCGATCGAAGGTGTTCAGGAAGACGTAATTTAAATCCTTTTGAACCTGAAAg                                                                        <  7:302107/147‑1 (MQ=255)                                                                        tACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAg                                                                        <  3:129905/149‑1 (MQ=255)                                                                           ccTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGtc                                                                     >  4:194594/1‑149 (MQ=255)                                                                           ccTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGtc                                                                     >  3:122088/1‑149 (MQ=255)                                                                            cTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTc                                                                                                                             >  2:198284/1‑92 (MQ=255)                                                                            cTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTc                                                                                                                             <  1:198284/92‑1 (MQ=255)                                                                                           cgccgcATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCa                                                     >  5:350033/1‑149 (MQ=255)                                                                                           cgccgcATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCa                                                     <  7:87954/149‑1 (MQ=255)                                                                                                cATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTc                                                <  8:226618/149‑1 (MQ=255)                                                                                                    cTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGa                                            <  3:304293/149‑1 (MQ=255)                                                                                                    cTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGa                                            <  3:299334/149‑1 (MQ=255)                                                                                                         gtCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGcggagtactcatggagtacgccatcgatc                                                                                                                      >  1:165350‑M1/1‑41 (MQ=255)                                                                                                         gtCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGcggagtactcatggagtacgccatcgatc                                                                                                                      <  2:165350‑M1/70‑30 (MQ=255)                                                                                                         gtCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGaa                                        <  1:79611/148‑1 (MQ=255)                                                                                                         gtCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGAAg                                       >  2:102418/1‑149 (MQ=255)                                                                                                            cgccctGCCTCGCCGTGCAGTACGCGAGGCCGCCATCGATGGCGTACTCCATCAGTACTCCGCGATCGAAGGGGTCCACGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGAAGTTa                                    <  4:278861/144‑1 (MQ=255)                                                                                                               cATTCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACTTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGAAGTTACg                                  <  7:131141/148‑1 (MQ=255)                                                                                                               cATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTTCTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGAAGTTACGc                                 >  8:269928/1‑149 (MQ=255)                                                                                                                    cTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGAAGTTACGCTGAcc                            <  3:194594/149‑1 (MQ=255)                                                                                                                    cTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGAAGTTACGCTGAcc                            <  2:212388/149‑1 (MQ=255)                                                                                                                       gCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGAAGTTACGCTGACCTTg                         <  4:122088/149‑1 (MQ=255)                                                                                                                         tgtgCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGtt                                                                                   <  6:254939/89‑1 (MQ=255)                                                                                                                         tgtgCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGtt                                                                                   >  5:254939/1‑89 (MQ=255)                                                                                                                         tgtgCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGtc                                                                     <  2:63319/103‑1 (MQ=255)                                                                                                                         tgtgCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGtc                                                                     >  1:63319/1‑103 (MQ=255)                                                                                                                                  gtCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGAAGTTACGCTGACCTTGTCGAAAAAggg              <  7:263843/149‑1 (MQ=255)                                                                                                                                     gAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGc                                                      <  8:205250/106‑1 (MQ=255)                                                                                                                                     gAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGc                                                      >  7:205250/1‑106 (MQ=255)                                                                                                                                          cGAGATCGATGGCGTACTCCATGAGTACTCCGcgatctcggcctcgactactgcacagccaggcatggaggacaacaggatgcggcgcagcgcgttgcccagggtatggccgaaaccacgctcgagaggctcgagcgtaattttggcgc      <  7:295829‑M2/149‑118 (MQ=255)                                                                                                                                          cGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGAAGTTACGCTGACCTTGTCGAAAAAGGGTTCggggg      >  3:127480/1‑149 (MQ=255)                                                                                                                                           gagaTCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTc                                                >  7:3536/1‑106 (MQ=255)                                                                                                                                           gagaTCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTc                                                <  8:3536/106‑1 (MQ=255)                                                                                                                                             gaTCGATGGCGTACTCCATGAGTACTCCGcgatctcggcctcgactactgcacagccaggcatggaggac                                                                                  <  2:165350‑M2/70‑42 (MQ=255)                                                                                                                                             gaTCGATGGCGTACTCCATGAGTACTCCGcgatctcggcctcgactactgcacagccaggcatggaggac                                                                                  >  1:165350‑M2/1‑29 (MQ=255)                                                                                                                                               tCGATGGCGTTCTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGAAGTTACGCTGACCTTGTCGAAAAAGGGTTCGGGggtggt  <  7:269928/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                  ATTGATGTGCAGGTAGTCAGTCCGACCCGCGCCAAAATTACGCTCGAGCCTCTCGAGCGTGGTTTCGGCCATACCCTGGGCAACGCGCTGCGCCGCATCCTGTTGTCCTCCATGCCTGGCTGTGCAGTAGTCGAGGCCGAGATCGATGGCGTACTCCATGAGTACTCCGCGATCGAAGGTGTTCAGGAAGACGTAATTGAAATCCTGTTGAACCTGAAAGGTCTCGCTATCAAACTGCATGGTCGTGACGAAGTTACGCTGACCTTGTCGAAAAAGGGTTCGGGGGTGGT  >  NC_002947/562957‑563246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.