New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	674337 =	56 (1.040)	4 (0.080)	4/242	NT	6.6%	intergenic (‑229/+77)	PP_0575/PP_0576	membrane protein/lipoprotein
	?	NC_002947	674395 =	61 (1.210)					intergenic (‑287/+19)	PP_0575/PP_0576	membrane protein/lipoprotein

GCCCGGAAGAACGCAACAGCGCAATCCGCAATACCGTGGCCAAGGTGCTGGGCAACTACCCACCGGGCAGCAAAAAATAGCGTTGGAACGCGGCTTTTGCATGCACCGTGGCCCGGCGGGAGCGGGTTTACCCGCGAAGCAATTGGCCCGGTG‑CATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/674493‑674337 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtg‑catgCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGCTTGGCGGGTAGTTGTTCATGATCTGCTCGGCACTGCCGCGCCAT  >  NC_002947/674395‑674537                                                                                                                                                                                                                                                                                                               GCCCGGAAGAACGCAACAGCGCAATCCGCAATACCGTGGCCAAGGTGCTGGGCAACTACCCACCGGGCAGCAAAAAATAGCGTTGGAACGCGGCTTTTGCATGCACCGTGGCCCGGCGGGAGCGGGTTTACCCGCGAAGCAATTGGCCC                                                                                                                                                          <  2:295078/149‑1   CCGGAAGAACGCAACAGCGCAATCCGCAATACCGTGGCCAAGGTGCTGGGCAACTACCCACCGGGCAGCAAAAAATAGCGTTGGAACGCGGCTTTTGCATGCACCGTGGCCCGGCGGGAGCGGGTTTACCCGCGAAGCAATTGGCCCGG                                                                                                                                                        >  6:232279/1‑149    CGGAAGAACGCAACAGCGCAATCCGCAATACCGTGGCCAAGGTGCTGGGCAACTACCCACCGGGCAGCAAAAAATAGCGTTGGAACGCGGCTTTTGCATGCACCGTGGCCCGGCGGGAGCGGGTTTACCCGCGAAGCAATTGGCCCGGT                                                                                                                                                       >  3:125340/1‑149               AACAGCGCAATCCGCAATACCGTGGCCAAGGTGCTGGGCAACTACCCACCGGGCAGCAAAAAATAGCGTTGGAACGCGGCTTTTGCATGCACCGTGGCCCGGCGGGAGCGGGTTTACCCGCGAAGCAATTGGCCCGGTGCCATGCAccg                                                                                                                                            <  7:200832/149‑4                                                                                                         ACCGTGGCCCGGCGGGAGCGGGTTTACCCGCGAAGCAATTTGCCCGGTG‑CATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGC                                                                <  7:119798/134‑1                                                                                                         ACCGTGGCCCGGCGGGAGCGGGTTTACCCGCGAAGCAATTGGCCCGCTG‑CATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCAACGGTATTGAGGATTGCGa                                                                >  8:119798/1‑133                                                                                                                   GGCGGGAGCGGGTTTACCCGCGAAGCAATTGGCCCGGTG‑CATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGCTTGGCGG                                       >  2:51708/1‑149                                                                                                                                        GAAGCAATTGGCCCGGTG‑CATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGCTTGGCGGGTAGTTGTTCATGATCTGCTC                  <  1:51708/149‑1                                                                                                                                                        TG‑CATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGCTTGGCGGGTAGTTGTTCATGATCTGCTCGGCACTGCCGCGCCAT  <  3:86126/149‑1                                                                                                                                                        TG‑CATGCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGCTTGGCGGGTAGTTGTTCATGATCTGCTCGGCACTGCCGCGCCAT  <  5:233745/149‑1                                                                                                                                                                                                                                                                                                               GCCCGGAAGAACGCAACAGCGCAATCCGCAATACCGTGGCCAAGGTGCTGGGCAACTACCCACCGGGCAGCAAAAAATAGCGTTGGAACGCGGCTTTTGCATGCACCGTGGCCCGGCGGGAGCGGGTTTACCCGCGAAGCAATTGGCCCGGTG‑CATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/674493‑674337 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtg‑catgCAAAAGCCGCGTTCCAACGCTATTTTTTGCTGCCCGGTGGGTAGTTGCCCAGCACCTTGGCCACGGTATTGCGGATTGCGCTGTTGCGTTCTTCCGGGCTTGGCGGGTAGTTGTTCATGATCTGCTCGGCACTGCCGCGCCAT  >  NC_002947/674395‑674537

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.