New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1543831	72 (1.330)	4 (0.080)	4/248	NT	5.8%	coding (635/1245 nt)	mdfA	multidrug MFS transporter
	?	NC_002947	= 1543880	62 (1.200)					coding (684/1245 nt)	mdfA	multidrug MFS transporter

GCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1543679‑1543831 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgccTGCAACGAAGCGGCGGTTGCCCAGCAACTGGCCATAGCCCGCCAACAGTGGCAGCAGGTGAATCGGCGTGAACGCCAGCCGCGAGCCGTCACGGCGCTCCACGCCCAGGGTTTCCGGCATCAACCGGTACAGCAGCAGCCAGGTCAG  <  NC_002947/1543880‑1543734                                                                                                                                                                                                                                                                                                              GCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGC                                                                                                                                                         >  8:307675/1‑149    GCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGC                                                                                                                                                      >  7:320961/1‑149     CAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGC                                                                                                                                                      >  8:193237/1‑148                                                                 CTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCTGCAACGAAGCGGCGGTTGCCCAGCAACTGGCCATAGCCCGCCAACAGTGGCAGCAGG                                                                                           <  7:309541/147‑1                                                                 CTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCTGCAACGAAGCGGCGGTTGCCCAGCAACTGGCCATAGCCCGCCAACAGTGGCAGCAGG                                                                                           >  8:309541/1‑147                                                                         GTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCTGCAACGAAGCGGCGGTTGCCCAGCAACTGGCCATAGCCCGCCAACAGTGGCAGCAG                                                                                            >  5:323159/1‑138                                                                         GTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCCTGCAACGAAGCGGCGGTTGCCCAGCAACTGGCCATAGCCCGCCAACAGTGGCAGCAG                                                                                            <  6:323159/138‑1                                                                                                                                                      TGCCTGCAACGAAGCGGCGGTCGCCCAGCAACTGGCCATAGCCCGCCAACAGTGGCAGCAGGTGAATCGGCGTGAACGCCAGCCGCGAGCCGTCACGGCGCTCCACGCCCAGGGTTTCCGG                                <  3:184535/121‑1                                                                                                                                                      TGCCTGCAACGAAGCGGCGGTAGCCCAGCAACTGGCCATAGCCCGCCAACAGTGGCAGCAGGTGAATCGGCGTGAACGCCAGCCGCGAGCCGTCACGGCGCTCCACGCCCAGGGTTTCCGG                                >  4:184535/1‑121                                                                                                                                                        CCTGCAACGAAGCGGCGGTTGCCCAGCAACTGGCCATAGCCCGCCAACAGTGGCAGCAGGTGAATCGGCGTGAACGCCAGCCGCGAGCCGTCACGGCGCTCCACGCCCAGGGTTTCCGGCATCAACCGGTACAGCAGCAGCCAGGTCAG  >  5:338663/1‑149                                                                                                                                                        CCTGCAACGAAGCGGCGGTTGCCCAGCAACTGGCCATAGCCCGCCAACAGTGGCAGCAGGTGAATCGGCGTGAACGCCAGCCGCGAGCCGTCACGGCGCTCCACGCCCAGGGTTTCCGGCATCAACCGGTACAGCAGCAGCCAGGTCAG  >  7:307675/1‑149                                                                                                                                                        CCTGCAACGAAGCGGCGGTTGCCCAGCAACTGGCCATAGCCCGCCAACAGTGGCAGCAGGTGAATCGGCGTGAACGCCAGCCGCGAGCCGTCACGGCGCTCCACGCCCAGGGTTTCCGGCATCAACCGGTACAGCAGCAGCCAGGTC    <  3:103668/147‑1                                                                                                                                                                                                                                                                                                              GCTGCAATGGCTGGACTGGCGCTGGCTGTTCGTGGCATTCGCCATCGGCGCGGTGCTGACCTGGCTGCTGCTGTACCGGTTGATGCCGGAAACCCTGGGCGTGGAGCGCCGTGACGGCTCGCGGCTGGCGTTCACGCCGATTCACCTGCTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1543679‑1543831 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgccTGCAACGAAGCGGCGGTTGCCCAGCAACTGGCCATAGCCCGCCAACAGTGGCAGCAGGTGAATCGGCGTGAACGCCAGCCGCGAGCCGTCACGGCGCTCCACGCCCAGGGTTTCCGGCATCAACCGGTACAGCAGCAGCCAGGTCAG  <  NC_002947/1543880‑1543734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.