New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1566935	42 (0.780)	3 (0.060)	3/242	NT	6.3%	coding (615/876 nt)	pcaR	pca regulon transcriptional regulator
	?	NC_002947	= 1566982	50 (0.990)					coding (662/876 nt)	pcaR	pca regulon transcriptional regulator

GGCCACGGTCGAGCGGCTGATCTC‑GGTCGATCTGTCGGTGGGCGGGCGCCTGCCGGCCTATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1566785‑1566935 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcaccTGCTGGATGCAGGCGAACAACGATTCGGGGTCATTCAGGGTGCGGCTGGTGCGCGCTTTGAGGTCGGCACGTTCCAGGTACTCACGCAGGCTGGTGTCATCCATGGCCGCCAGCAGAATGCGCCCCATCGACGTGCAATAGGCCGG  <  NC_002947/1566982‑1566837                                                                                                                                                                                                                                                                                                            GGCCACGGTCGAGCGGCTGATCTCGGGTCGATCTGTCGGTGGGCGGGCGCCTGCCGGCCTATTGCCCGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGC                                                                                                                                                       >  1:179659/1‑149  GCCACGGTCGAGCGGCTGATCTC‑GGTCGATCTGTCGGTGGGCGGGCGCCTGCCGGCCTATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCAC                                                                                                                                                     <  8:190388/149‑1   CCACGGTCGAGCGGCTGATCTC‑GGTCGATCTGTCGGTGGGCGGGCGCCTGCCGGCCTATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCAC                                                                                                                                                     >  1:173836/1‑148                                                              TTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCTGCTGGATGCAGGCGAACAACGATTCGGGGTCATTCAGGGTGCGGCTGGTGCGCGCT                                                                                           <  3:24787/148‑1                                                                                        TGGCGGCCATGGATGACTCCAGCCTGGGTGAGTACCTGGAACGTGCCGACCTCATAGCGCGCTGCTGCTGGATGCAGGCGAACAACGATTCGGGGTCATTCAGGGTGCGGCTGGTGCGC                                                                                              <  7:325757/119‑1                                                                                        TGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCTGCTGGATGCAGCCGAACAACGATTCGGGGTCATTCAGGCTGCGGCTCGTGCGC                                                                                              >  8:325757/1‑119                                                                                                                                                 CGCGCACCTGCTGGATGCAGGCGAACAACGATTCGGGGTCATTCAGGGTGCGGCTGGTGCGCGCTTTGAGGTCGGCACGTTCCAGGTACTCACGCAGGCTGGTGTCATCCATGGCCGCCAGCAGAATGCGCCCCATCGACGTGCAATA        <  2:225451/148‑1                                                                                                                                                   CGCACCTGCTGGATGCATGCGTACAACGTTTCGGTGGCATTCATGGTGCGGCTGGTGCGCTGTTTGAGGTCGGCACTTTCCAGGTACTCACGCAGGCTGGTGTCATCCATGTCCGCCAGCAGAATGCGCCCCATCGAAGTGCAATAGGC     <  4:299404/149‑1                                                                                                                                                      ACCTGCTGGATGCAGGCGAACAACGATTCGGGGTCATTCAGGGTGCGGCTGGTGCGCGCTTTGAGGTCGGCACGTTCCAGGTACTCACGCAGGCTGGTGTCATCCATGGCCGCCAGCAGAATGCGCCCCATCGACGTGCAATAGGCCGG  <  3:324292/149‑1                                                                                                                                                                                                                                                                                                            GGCCACGGTCGAGCGGCTGATCTC‑GGTCGATCTGTCGGTGGGCGGGCGCCTGCCGGCCTATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1566785‑1566935 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcaccTGCTGGATGCAGGCGAACAACGATTCGGGGTCATTCAGGGTGCGGCTGGTGCGCGCTTTGAGGTCGGCACGTTCCAGGTACTCACGCAGGCTGGTGTCATCCATGGCCGCCAGCAGAATGCGCCCCATCGACGTGCAATAGGCCGG  <  NC_002947/1566982‑1566837

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.