New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1566935	42 (0.780)	3 (0.060)	3/242	NT	6.3%	coding (615/876 nt)	pcaR	pca regulon transcriptional regulator
	?	NC_002947	= 1566982	50 (0.990)					coding (662/876 nt)	pcaR	pca regulon transcriptional regulator

GAGCGGCTGATCTCGGTCGATCTGTCGGTGGGCGGGCGCCTGCCGGCCTATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCGATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGGTGTTGGC  >  NC_002947/1566795‑1567081                                                                                                                                             |                                                                                                                                                   gAGCGGCTGATCTCGGTCGATCTGTCGGTGGGCGGGCGCCTGCCGGCCTATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCa                                                                                                                                             <  2:173836/148‑1 (MQ=255)            ctcGGTCGATCTGTCGGTGGGCGGGCGCCTGCCGGCCTATTTCTCGTAGATGGCGAGCATTCTGCTGGCGGCCACGGATGACAACAGCCTGCGTGAGTAACTGGAACGTGCAGACCTCAAAGCGCGCACGAGcctc                                                                                                                                              <  4:177874/136‑3 (MQ=255)            ctcGGTCGATCTGTCGGTGGGCGGGAGCCTGCCGGCCTATTGAACGTCGATGGGGCGCATTCTGCTGGCGGCCACGGATGACACCAGCCTGCGTGAGTACCTGGAACGTTCCGACCTCAAAGCGCGCACCAGCCGc                                                                                                                                              >  3:177874/1‑136 (MQ=255)               ggTCGATCTGTCGGTGGGCGGGCGCCTGCCGGCCTATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGAc                                                                                                                                  <  4:264654/145‑1 (MQ=255)                       tGTCGGTGGGCGGGCGCCTGCCGGCCTATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCgttg                                                                                                                      >  6:272608/1‑149 (MQ=255)                         tCGGTGGGCGGGCGCCTGCCGGCCTATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATc                                                                                                                          <  5:144966/143‑1 (MQ=255)                         tCGGTGGGCGGGCGCCTGCCGGCCTATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATc                                                                                                                          <  6:303979/143‑1 (MQ=255)                         tCGGTGGGCGGGCGCCTGCCGGCCTATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCgtt                                                                                                                       <  5:223700/146‑1 (MQ=255)                             tGGGCGGGCGCCTGCCGGCCTATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGcc                                                                                                                >  4:227849/1‑149 (MQ=255)                               ggcgggcgCCTGCCGGCCTATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCt                                                                                                               <  1:128616/148‑1 (MQ=255)                                           ccGGCCTATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAggt                                                                                                  <  3:324292‑M2/149‑4 (MQ=255)                                              gCCTATTGCACTTCGATGGGGCGCATTCTGCTGGCGGACATGGATGACACCAGCCTGCGTGAGTACCTGGAAAGTGCCGACCTCAAACAGCGCACCAGCCGCACCATGAATGCCACCGAAACGTTGTACGCATGCATCCAGCAggtgcg                                                                                               <  4:299404‑M2/149‑7 (MQ=255)                                                 tATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAggtgcgcg                                                                                             <  2:225451‑M2/148‑9 (MQ=255)                                                   ttGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCtgctggatgcaggcgaacaacgattcggggtcattcagggtgcggctggtgcgcgct                                                                                           <  3:24787‑M1/148‑58 (MQ=255)                                                     gCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAg                                                                                        >  5:216023/1‑149 (MQ=255)                                                                gggCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGgtgtgt                                                                             <  1:225451/149‑1 (MQ=255)                                                                 ggCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGtgtgtg                                                                            <  1:224558/149‑1 (MQ=255)                                                                  gcgcATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGgtgtg                                                                              >  3:168245/1‑146 (MQ=255)                                                                  gcgcATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGgtgtg                                                                              <  4:168245/146‑1 (MQ=255)                                                                  gcgcATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTgg                                                                           >  2:265694/1‑149 (MQ=255)                                                                    gcATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTa                                                                         <  5:5216/149‑1 (MQ=255)                                                                          tgctgGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTa                                                                         >  5:158578/1‑143 (MQ=255)                                                                          tgctgGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTa                                                                         <  6:158578/143‑1 (MQ=255)                                                                             tgGCGGCCATGGATGACTCCAGCCTGGGTGAGTACCTGGAACGTGCCGACCTCATAGCGCGCTGCtgctggatgcaggcgaacaacgattcggggtcattcagggtgcggctggtgcgc                                                                                              <  7:325757‑M1/119‑55 (MQ=255)                                                                             tgGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCtgctggatgcagccgaacaacgattcggggtcattcaggctgcggctcgtgcgc                                                                                              >  8:325757‑M1/1‑65 (MQ=255)                                                                               gcggcCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTa                                                                         <  6:124450/138‑1 (MQ=255)                                                                               gcggcCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTa                                                                         >  5:124450/1‑138 (MQ=255)                                                                               gcggcCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACt                                                              <  2:179659/149‑1 (MQ=255)                                                                                      tGGATGACACCAGCCTGCGTTAGTACCTTGATCGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCTCACAGGGCTGGTGTGTTGTAGACCAGGAACTGGAACAg                                                       <  3:299404/149‑1 (MQ=255)                                                                                       ggATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAgg                                                      >  2:76084/1‑149 (MQ=255)                                                                                        gATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAgg                                                      <  5:272608/148‑1 (MQ=255)                                                                                          tGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGc                                                   <  1:265694/149‑1 (MQ=255)                                                                                           gACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTgg                                                                           <  7:322401/124‑1 (MQ=255)                                                                                           gACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTgg                                                                           >  8:322401/1‑124 (MQ=255)                                                                                              acCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGc                                                >  4:57696/1‑148 (MQ=255)                                                                                                cAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGcgat                                             <  3:227849/149‑1 (MQ=255)                                                                                                     tGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCGAtt                                        >  5:75195/1‑149 (MQ=255)                                                                                                        gTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCGATtgcc                                     <  4:324292/149‑1 (MQ=255)                                                                                                               ccTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCGATTGCCGTGCCgg                              >  7:60887/1‑149 (MQ=255)                                                                                                               ccTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCGATTGCCGTGCCgg                              >  8:137285/1‑149 (MQ=255)                                                                                                                cTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGgt                                                                                 <  4:235681/97‑1 (MQ=255)                                                                                                                cTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGgt                                                                                 >  3:235681/1‑97 (MQ=255)                                                                                                                cTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCGATTGCCGTGCCGgt                             <  6:216023/149‑1 (MQ=255)                                                                                                                 tGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCGATTGCCGTGCCGgtg                            >  7:122857/1‑149 (MQ=255)                                                                                                                      cGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCGATTGCCGTGCCGGTGTATGa                       <  7:137285/149‑1 (MQ=255)                                                                                                                                tCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAggg                                                     >  1:289598/1‑109 (MQ=255)                                                                                                                                tCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAggg                                                     <  2:289598/109‑1 (MQ=255)                                                                                                                                  aaaGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCGATTGCCGTGCCGGTGTATGACGCTTCgggg             >  1:310819/1‑147 (MQ=255)                                                                                                                                  aaaGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCGATTGCCGTGCCGGTGTATGACGCTTCgggg             >  2:195118/1‑147 (MQ=255)                                                                                                                                    aGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAggtgcgcgctttgaggtcggcacgttccaggtactcacgcaggctggtgtcatccatggccgccagcagaatgcgccccatcgacgtgcaa          <  3:24787‑M2/148‑92 (MQ=255)                                                                                                                                      cgcgcACCtgctggatgcaggcgaacaacgattcggggtcattcagggtgcggctggtgcgcgctttgaggtcggcacgttccaggtactcacgcaggctggtgtcatccatggccgccagcagaatgcgccccatcgacgtgcaata        <  2:225451‑M1/148‑141 (MQ=255)                                                                                                                                       gcgcACGAGCCGCAGCCTGAATGACCCCGAATCGTTGTTCGGCTGCATCCAGCAggtgcgcgctttgaggtcggcacgttccaggtactcacgcaggctggtgtcatccatggccgcca                                    >  8:325757‑M2/1‑54 (MQ=255)                                                                                                                                       gcgcACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAgcagcgcgctatgaggtcggcacgttccaggtactcacccaggctggagtcatccatggccgcca                                    <  7:325757‑M2/119‑66 (MQ=255)                                                                                                                                        cgcACCtgctggatgcatgcgtacaacgtttcggtggcattcatggtgcggctggtgcgctgtttgaggtcggcactttccaggtactcacgcaggctggtgtcatccatgtccgccagcagaatgcgccccatcgaagtgcaataggc     <  4:299404‑M1/149‑144 (MQ=255)                                                                                                                                          cACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCGATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGgtg       <  2:268346/145‑1 (MQ=255)                                                                                                                                          cACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCGATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGgtg       >  1:268346/1‑145 (MQ=255)                                                                                                                                           aCCtgctggatgcaggcgaacaacgattcggggtcattcagggtgcggctggtgcgcgctttgaggtcggcacgttccaggtactcacgcaggctggtgtcatccatggccgccagcagaatgcgccccatcgacgtgcaataggccgg  <  3:324292‑M1/149‑147 (MQ=255)                                                                                                                                           aCCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCGATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGGTGTTGGc  >  4:276398/1‑149 (MQ=255)                                                                                                                                           aCCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCGATTGCCGTGCCGGTGTATGACGATTCGCGGCAGGTGTTGGc  >  1:53744/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                   GAGCGGCTGATCTCGGTCGATCTGTCGGTGGGCGGGCGCCTGCCGGCCTATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCGATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGGTGTTGGC  >  NC_002947/1566795‑1567081

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.