New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1566935	42 (0.780)	3 (0.060)	3/242	NT	6.3%	coding (615/876 nt)	pcaR	pca regulon transcriptional regulator
	?	NC_002947	= 1566982	50 (0.990)					coding (662/876 nt)	pcaR	pca regulon transcriptional regulator

CCGGCCTATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGGTGTTGGCTGCGCTGAACGTCAGTACCCATGTCGGGCGGGTGACCCGCAGT  >  NC_002947/1566837‑1567124                                                                                                                                                  |                                                                                                                                                ccGGCCTATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAggt                                                                                                                                              <  3:324292‑M2/149‑4 (MQ=255)    gCCTATTGCACTTCGATGGGGCGCATTCTGCTGGCGGACATGGATGACACCAGCCTGCGTGAGTACCTGGAAAGTGCCGACCTCAAACAGCGCACCAGCCGCACCATGAATGCCACCGAAACGTTGTACGCATGCATCCAGCAggtgcg                                                                                                                                           <  4:299404‑M2/149‑7 (MQ=255)       tATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAggtgcgcg                                                                                                                                         <  2:225451‑M2/148‑9 (MQ=255)           gCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAg                                                                                                                                    >  5:216023/1‑149 (MQ=255)                      gggCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGgtgtgt                                                                                                                         <  1:225451/149‑1 (MQ=255)                       ggCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGtgtgtg                                                                                                                        <  1:224558/149‑1 (MQ=255)                        gcgcATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGgtgtg                                                                                                                          <  4:168245/146‑1 (MQ=255)                        gcgcATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGgtgtg                                                                                                                          >  3:168245/1‑146 (MQ=255)                        gcgcATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTgg                                                                                                                       >  2:265694/1‑149 (MQ=255)                          gcATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTa                                                                                                                     <  5:5216/149‑1 (MQ=255)                                tgctgGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTa                                                                                                                     >  5:158578/1‑143 (MQ=255)                                tgctgGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTa                                                                                                                     <  6:158578/143‑1 (MQ=255)                                     gcggcCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTa                                                                                                                     >  5:124450/1‑138 (MQ=255)                                     gcggcCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTa                                                                                                                     <  6:124450/138‑1 (MQ=255)                                     gcggcCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACt                                                                                                          <  2:179659/149‑1 (MQ=255)                                            tGGATGACACCAGCCTGCGTTAGTACCTTGATCGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCTCACAGGGCTGGTGTGTTGTAGACCAGGAACTGGAACAg                                                                                                   <  3:299404/149‑1 (MQ=255)                                             ggATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAgg                                                                                                  >  2:76084/1‑149 (MQ=255)                                              gATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAgg                                                                                                  <  5:272608/148‑1 (MQ=255)                                                tGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGc                                                                                               <  1:265694/149‑1 (MQ=255)                                                 gACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTgg                                                                                                                       >  8:322401/1‑124 (MQ=255)                                                 gACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTgg                                                                                                                       <  7:322401/124‑1 (MQ=255)                                                    acCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGc                                                                                            >  4:57696/1‑148 (MQ=255)                                                      cAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGcgat                                                                                         <  3:227849/149‑1 (MQ=255)                                                           tGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑Att                                                                                   >  5:75195/1‑149 (MQ=255)                                                              gTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATtgcc                                                                                <  4:324292/149‑1 (MQ=255)                                                                     ccTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCgg                                                                         >  8:137285/1‑149 (MQ=255)                                                                     ccTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCgg                                                                         >  7:60887/1‑149 (MQ=255)                                                                      cTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGgt                                                                                                                             >  3:235681/1‑97 (MQ=255)                                                                      cTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGgt                                                                                                                             <  4:235681/97‑1 (MQ=255)                                                                      cTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGgt                                                                        <  6:216023/149‑1 (MQ=255)                                                                       tGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGgtg                                                                       >  7:122857/1‑149 (MQ=255)                                                                            cGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGa                                                                  <  7:137285/149‑1 (MQ=255)                                                                                      tCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAggg                                                                                                 >  1:289598/1‑109 (MQ=255)                                                                                      tCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAggg                                                                                                 <  2:289598/109‑1 (MQ=255)                                                                                        aaaGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGCTTCgggg                                                        >  2:195118/1‑147 (MQ=255)                                                                                        aaaGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGCTTCgggg                                                        >  1:310819/1‑147 (MQ=255)                                                                                          aGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAggtgcgcgctttgaggtcggcacgttccaggtactcacgcaggctggtgtcatccatggccgccagcagaatgcgccccatcgacgtgcaa                                                      <  3:24787‑M2/148‑92 (MQ=255)                                                                                             gcgcACGAGCCGCAGCCTGAATGACCCCGAATCGTTGTTCGGCTGCATCCAGCAggtgcgcgctttgaggtcggcacgttccaggtactcacgcaggctggtgtcatccatggccgcca                                                                                >  8:325757‑M2/1‑54 (MQ=255)                                                                                             gcgcACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAgcagcgcgctatgaggtcggcacgttccaggtactcacccaggctggagtcatccatggccgcca                                                                                <  7:325757‑M2/119‑66 (MQ=255)                                                                                                cACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGgtg                                                  >  1:268346/1‑145 (MQ=255)                                                                                                cACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGgtg                                                  <  2:268346/145‑1 (MQ=255)                                                                                                 aCCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGGTGTTGGc                                             >  4:276398/1‑149 (MQ=255)                                                                                                 aCCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGATTCGCGGCAGGTGTTGGc                                             >  1:53744/1‑149 (MQ=255)                                                                                                      ccGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGGTGTTGGCTgcgc                                        <  6:75195/149‑1 (MQ=255)                                                                                                        gCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCGCATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGGTGTTGGCTGCGCt                                       <  1:76084/149‑1 (MQ=255)                                                                                                           cccTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGGTGTTGGCTGCGCTGAAc                                   <  8:122857/149‑1 (MQ=255)                                                                                                            ccTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGGTGTTg                                               >  5:73901/1‑136 (MQ=255)                                                                                                            ccTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGGTGTTg                                               <  6:73901/136‑1 (MQ=255)                                                                                                                    aCCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGGTGTTGGCTgcgc                                        <  8:290886/135‑1 (MQ=255)                                                                                                                    aCCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGGTGTTGGCTgcgc                                        >  7:290886/1‑135 (MQ=255)                                                                                                                     ccccGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGCTTCGGGGCATGTGTTGGCTGCGCTGAACGTCAGTAccc                         <  1:195118/149‑1 (MQ=255)                                                                                                                                  ttCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGGTGTTGGCTGCGCTGAACGTCAGTACCCATGTCGGGCGGGt            <  2:53744/149‑1 (MQ=255)                                                                                                                                     gCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGGTGTTGGCTGCGCTGAACGTCAGTACCCATGTCGGGCGGGTGa          <  3:276398/148‑1 (MQ=255)                                                                                                                                       cTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGcgat                                                                                         >  6:157659/1‑68 (MQ=255)                                                                                                                                       cTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGcgat                                                                                         <  5:157659/68‑1 (MQ=255)                                                                                                                                           aTCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGGTGTTGGCTGCGCTGAACGTCAGTACCCATGTCGGGCGGGTGACCCGCAg   >  4:232094/1‑149 (MQ=255)                                                                                                                                            tCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGGTGTTGGCTGCGCTGAACGTCAGTACCCATGTCGGGCGGGTGACCCGCAGt  >  1:246160/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                CCGGCCTATTGCACGTCGATGGGGCGCATTCTGCTGGCGGCCATGGATGACACCAGCCTGCGTGAGTACCTGGAACGTGCCGACCTCAAAGCGCGCACCAGCCGCACCCTGAATGACCCCGAATCGTTGTTCGCCTGCATCCAGCAGGTGCGCGCACAGGGCTGGTGTGTGGTAGACCAGGAACTGGAACAGGGGCTGCGATCG‑ATTGCCGTGCCGGTGTATGACGCTTCGGGGCAGGTGTTGGCTGCGCTGAACGTCAGTACCCATGTCGGGCGGGTGACCCGCAGT  >  NC_002947/1566837‑1567124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.