New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 162428446 (0.850)3 (0.060) 3/250 NT 6.3% coding (64/942 nt) PP_1423 hypothetical protein
?NC_002947 = 1624302 45 (0.870)coding (46/942 nt) PP_1423 hypothetical protein

GCCAGCAAGTAGCCGTTGCCTTCGGGCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1624136‑1624284
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatcCTCGCCGTCCGCGGCTCCGATGCAGGCAAG  <  NC_002947/1624302‑1624273
                                                                                                                                                                                   
GCCAGCAAGTAGCCGTTGCCTTCGGGCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCAT                                 <  8:239411/148‑1
GCCAGCAAGTAGCCGTTGCCTTCGGGCACTATGCGGAAGCTAGACTGCATGCGCCCCTTGACCATGCAGCGGCCGCCGAGGCTGGCGTGTACCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCATTAAATTGCCTGCATC                                >  6:267730/1‑149
              GTTGCCTTCGGGCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATC                                <  3:40604/135‑1
              GTTGCCTTCGGGCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATC                                >  4:40604/1‑135
                               TGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCTGGAACTTGCCTGCATCCTCGCCGTCCGCGGCTCCGATGCAGGCAAG  <  4:296042/148‑1
                                                                       GGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCCTCGCCGTCCGCGGCTCCGATGCAG       <  5:101102/103‑1
                                                                       GGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCCTCGCCGTCCGCGGCTCCGATGCAG       >  6:101102/1‑103
                                                                                                                                                                                   
GCCAGCAAGTAGCCGTTGCCTTCGGGCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1624136‑1624284
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatcCTCGCCGTCCGCGGCTCCGATGCAGGCAAG  <  NC_002947/1624302‑1624273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.