New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1624284	46 (0.850)	3 (0.060)	3/250	NT	6.3%	coding (64/942 nt)	PP_1423	hypothetical protein
	?	NC_002947	= 1624302	45 (0.870)					coding (46/942 nt)	PP_1423	hypothetical protein

CCTTCGGGCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATAGGTAGGTGACTAGACCAACGCCCGGTGTCGCTTCGCGCGCCTGG  >  NC_002947/1624154‑1624447                                                                                                                                                     |                                                                                                                                                   ccTTCGGGCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAg                                                                                                                                                    >  4:112135/1‑149 (MQ=255)        gCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGccc                                                                                                                                             >  4:297040/1‑149 (MQ=255)        gCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGccc                                                                                                                                             <  3:112135/149‑1 (MQ=255)            tATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGt                                                                                                                                         >  5:218232/1‑149 (MQ=255)              tGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTg                                                                                                                                        <  8:131385/148‑1 (MQ=255)                    aGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAgg                                                                                                                                 <  4:223647/149‑1 (MQ=255)                    aGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAgg                                                                                                                                 <  3:297040/149‑1 (MQ=255)                         gACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGa                                                                                                                                     <  7:129186/140‑1 (MQ=255)                         gACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGa                                                                                                                                     >  8:129186/1‑140 (MQ=255)                           cTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGATGGCGAGGATGCCCTCGTGGGACAGGGGGCaga                                                                                                                          <  3:311710/149‑1 (MQ=255)                            tGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCag                                                                                                                           >  2:114855/1‑147 (MQ=255)                                tGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑Gaaa                                                                                                                    <  8:104381/149‑1 (MQ=255)                                          gACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATc                                                                                                            <  6:218232/147‑1 (MQ=255)                                             cATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCTAAAGGCGAGGATGAGCTCGTGGGACAGGGGGCAGAA‑TAAATCGGCATAgggcc                                                                                                       >  1:283384/1‑146 (MQ=255)                                              aTGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCAt                                                                                                      >  5:324383/1‑149 (MQ=255)                                              aTGCAGCGGGCGCCGAGGCTGGCGTGATCCTGGCTGAGGAAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCAGCGGACGGCGAGGATGCCCACGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGACCAt                                                                                                      >  6:282349/1‑149 (MQ=255)                                                 cAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATggg                                                                                                   <  6:324383/149‑1 (MQ=255)                                                   gCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGt                                                                                                  >  1:10414/1‑148 (MQ=255)                                                                        ttCCTGGCTGAGGTAGTTGATGTTTCTGGTCAGCTGTCCTTGCAGGAAATTGCCTGCATCGGAGCCGCGGACGGCGAGTATGCCCTCTTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTgg                                                                            <  5:267730/149‑1 (MQ=255)                                                                           cTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTggcgg                                                                         >  6:100576/1‑149 (MQ=255)                                                                                    gTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGTATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGc                                                                                                         >  1:244470/1‑108 (MQ=255)                                                                                    gTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGc                                                                                                         <  2:244470/108‑1 (MQ=255)                                                                                          gATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGcc                                                          >  1:142295/1‑149 (MQ=255)                                                                                              ttGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGt                                                                                         <  5:83498/114‑1 (MQ=255)                                                                                              ttGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGt                                                                                         >  6:83498/1‑114 (MQ=255)                                                                                                gCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTggc                                                                           >  1:255893/1‑126 (MQ=255)                                                                                                gCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTggc                                                                           <  2:255893/126‑1 (MQ=255)                                                                                                    gTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCa                                                                                                <  4:102170/101‑1 (MQ=255)                                                                                                    gTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCa                                                                                                >  3:102170/1‑101 (MQ=255)                                                                                                    gTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACaaaa                                                >  7:298198/1‑149 (MQ=255)                                                                                                      cAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAAta                                              <  2:283384/149‑1 (MQ=255)                                                                                                       aGCTGGCCTTGCAGGAACTTGCCTGCTTCGGAGCCGCGTACGGCGTAGTTGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGGCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAAtag                                             <  1:114855/149‑1 (MQ=255)                                                                                                       aGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCg                                                                                                                 <  5:130822/81‑1 (MQ=255)                                                                                                       aGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAAtag                                             >  5:59773/1‑149 (MQ=255)                                                                                                       aGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAAtag                                             >  6:101611/1‑149 (MQ=255)                                                                                                       aGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAAtag                                             <  5:100576/149‑1 (MQ=255)                                                                                                       aGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCACAA‑GAAAGCg                                                                                                                 >  6:130822/1‑81 (MQ=255)                                                                                                         cTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAAtaggt                                           <  2:10414/149‑1 (MQ=255)                                                                                                             ccTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATaggtaggt                                       <  6:59773/149‑1 (MQ=255)                                                                                                              cTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAACGCAAGCGGAATAGGCCATGGGTCATAGCGGTGGCTTAAGACTGGCGGCCCTCAAAGAACGCCGGTAACAAAATatgtaggt                                       >  1:279850/1‑149 (MQ=255)                                                                                                                 gCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATAGGTAGGTGAc                                    <  8:298198/148‑1 (MQ=255)                                                                                                                  cAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATAGGTAGGTGACt                                   <  2:142295/148‑1 (MQ=255)                                                                                                                   aGGAACTTGCCTTCATCGGAGCCGCTGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGATTCTGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATaggtaggt                                       <  5:239186/143‑1 (MQ=255)                                                                                                                       aCTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATAGGTAGGTGACTAGAcc                              >  8:32298/1‑148 (MQ=255)                                                                                                                        cTTGCCTGCATCGGAGCCGCGGACGGCGAGgatgcaggcaagttccagcaaggccagctgacctgcaacatcaactacctcagccaggaacacgccagcctcggcgcccgctgcatggtcaaggggcgcatgcagtcgagcttccgca                              <  4:296042‑M2/148‑119 (MQ=255)                                                                                                                             cTGCATCGGAGCCGCGGACGGCGAGgatgcaggcaagttcctgcaaggccagctgacctgcaacatcaactacctcagccaggaacacgccagcctcggcgcc                                                                      >  6:101102‑M2/1‑25 (MQ=255)                                                                                                                             cTGCATCGGAGCCGCGGACGGCGAGgatgcaggcaagttcctgcaaggccagctgacctgcaacatcaactacctcagccaggaacacgccagcctcggcgcc                                                                      <  5:101102‑M2/103‑79 (MQ=255)                                                                                                                               gCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATAGGTAGGTGACTAGACCAACGCCCgg                     >  7:217552/1‑149 (MQ=255)                                                                                                                                    ggAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATAGGTAGGTGACTAGACCAACGCCCGGTGTc                 <  5:101611/148‑1 (MQ=255)                                                                                                                                        ccGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATAGGTAGGTGACTAGACCAACGCCCGGTGTCGCTTc            >  4:279984/1‑149 (MQ=255)                                                                                                                                                ggCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATAGGTAGGTGACTAGACCAACGCCCGGTGTCGCTTCGCGCGCCt    >  2:39335/1‑149 (MQ=255)                                                                                                                                                  cGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATAGGTAGGTGACTAGACCAACGCCCGGTGTCGCTTCGCGCGCCTgg  >  2:215358/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CCTTCGGGCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATAGGTAGGTGACTAGACCAACGCCCGGTGTCGCTTCGCGCGCCTGG  >  NC_002947/1624154‑1624447

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.