New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1624284	46 (0.850)	3 (0.060)	3/250	NT	6.3%	coding (64/942 nt)	PP_1423	hypothetical protein
	?	NC_002947	= 1624302	45 (0.870)					coding (46/942 nt)	PP_1423	hypothetical protein

GCCAGCAAGTAGCCGTTGCCTTCGGGCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATAGGTAGGTGACTAGACCAACGCCCGG  >  NC_002947/1624136‑1624428                                                                                                                                                     |                                                                                                                                                  gCCAGCAAGTAGCCGTTGCCTTCGGGCACTATGCGGAAGCTAGACTGCATGCGCCCCTTGACCATGCAGCGGCCGCCGAGGCTGGCGTGTACCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCATTAAATTGCCTGCATC                                                                                                                                                   >  6:267730‑M1/1‑149 (MQ=255)    aGCAAGTAGCCGTTGCCTTCGGGCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGa                                                                                                                                                <  4:257360/149‑1 (MQ=255)          tAGCCGTTGCCTTCGGGCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCcgcg                                                                                                                                          >  7:131385/1‑149 (MQ=255)            gCCGTTGCCTTCGGGCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGa                                                                                                                                        <  1:167056/149‑1 (MQ=255)               gTTGCCTTCGGGCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATC                                                                                                                                                   <  3:40604‑M1/135‑1 (MQ=255)               gTTGCCTTCGGGCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATC                                                                                                                                                   >  4:40604‑M1/1‑135 (MQ=255)                   ccTTCGGGCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAg                                                                                                                                 >  4:112135/1‑149 (MQ=255)                          gCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGccc                                                                                                                          >  4:297040/1‑149 (MQ=255)                          gCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGccc                                                                                                                          <  3:112135/149‑1 (MQ=255)                              tATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGt                                                                                                                      >  5:218232/1‑149 (MQ=255)                                tGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCTGGAACTTGCCTGCATCctcgccgtccgcggctccgatgcaggcaag                                                                                                                     <  4:296042‑M1/148‑31 (MQ=255)                                tGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTg                                                                                                                     <  8:131385/148‑1 (MQ=255)                                      aGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAgg                                                                                                              <  4:223647/149‑1 (MQ=255)                                      aGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAgg                                                                                                              <  3:297040/149‑1 (MQ=255)                                           gACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGa                                                                                                                  >  8:129186/1‑140 (MQ=255)                                           gACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGa                                                                                                                  <  7:129186/140‑1 (MQ=255)                                             cTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGATGGCGAGGATGCCCTCGTGGGACAGGGGGCaga                                                                                                       <  3:311710/149‑1 (MQ=255)                                              tGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCag                                                                                                        >  2:114855/1‑147 (MQ=255)                                                  tGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑Gaaa                                                                                                 <  8:104381/149‑1 (MQ=255)                                                            gACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATc                                                                                         <  6:218232/147‑1 (MQ=255)                                                               cATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCTAAAGGCGAGGATGAGCTCGTGGGACAGGGGGCAGAA‑TAAATCGGCATAgggcc                                                                                    >  1:283384/1‑146 (MQ=255)                                                                aTGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCAt                                                                                   >  5:324383/1‑149 (MQ=255)                                                                aTGCAGCGGGCGCCGAGGCTGGCGTGATCCTGGCTGAGGAAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCAGCGGACGGCGAGGATGCCCACGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGACCAt                                                                                   >  6:282349/1‑149 (MQ=255)                                                                   cAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATggg                                                                                <  6:324383/149‑1 (MQ=255)                                                                     gCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGt                                                                               >  1:10414/1‑148 (MQ=255)                                                                        ggCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCctcgccgtccgcggctccgatgcag                                                                                                                          <  5:101102‑M1/103‑26 (MQ=255)                                                                        ggCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCctcgccgtccgcggctccgatgcag                                                                                                                          >  6:101102‑M1/1‑78 (MQ=255)                                                                                          ttCCTGGCTGAGGTAGTTGATGTTTCTGGTCAGCTGTCCTTGCAGGAAATTGCCTGCATCGGAGCCGCGGACGGCGAGTATGCCCTCTTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTgg                                                         <  5:267730/149‑1 (MQ=255)                                                                                             cTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTggcgg                                                      >  6:100576/1‑149 (MQ=255)                                                                                                      gTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGTATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGc                                                                                      >  1:244470/1‑108 (MQ=255)                                                                                                      gTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGc                                                                                      <  2:244470/108‑1 (MQ=255)                                                                                                            gATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGcc                                       >  1:142295/1‑149 (MQ=255)                                                                                                                ttGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGt                                                                      >  6:83498/1‑114 (MQ=255)                                                                                                                ttGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGt                                                                      <  5:83498/114‑1 (MQ=255)                                                                                                                  gCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTggc                                                        >  1:255893/1‑126 (MQ=255)                                                                                                                  gCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTggc                                                        <  2:255893/126‑1 (MQ=255)                                                                                                                      gTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCa                                                                             >  3:102170/1‑101 (MQ=255)                                                                                                                      gTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCa                                                                             <  4:102170/101‑1 (MQ=255)                                                                                                                      gTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACaaaa                             >  7:298198/1‑149 (MQ=255)                                                                                                                        cAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAAta                           <  2:283384/149‑1 (MQ=255)                                                                                                                         aGCTGGCCTTGCAGGAACTTGCCTGCTTCGGAGCCGCGTACGGCGTAGTTGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGGCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAAtag                          <  1:114855/149‑1 (MQ=255)                                                                                                                         aGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCg                                                                                              <  5:130822/81‑1 (MQ=255)                                                                                                                         aGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAAtag                          >  6:101611/1‑149 (MQ=255)                                                                                                                         aGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAAtag                          >  5:59773/1‑149 (MQ=255)                                                                                                                         aGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAAtag                          <  5:100576/149‑1 (MQ=255)                                                                                                                         aGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCACAA‑GAAAGCg                                                                                              >  6:130822/1‑81 (MQ=255)                                                                                                                           cTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAAtaggt                        <  2:10414/149‑1 (MQ=255)                                                                                                                               ccTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATaggtaggt                    <  6:59773/149‑1 (MQ=255)                                                                                                                                cTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAACGCAAGCGGAATAGGCCATGGGTCATAGCGGTGGCTTAAGACTGGCGGCCCTCAAAGAACGCCGGTAACAAAATatgtaggt                    >  1:279850/1‑149 (MQ=255)                                                                                                                                   gCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATAGGTAGGTGAc                 <  8:298198/148‑1 (MQ=255)                                                                                                                                    cAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATAGGTAGGTGACt                <  2:142295/148‑1 (MQ=255)                                                                                                                                     aGGAACTTGCCTTCATCGGAGCCGCTGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGATTCTGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATaggtaggt                    <  5:239186/143‑1 (MQ=255)                                                                                                                                         aCTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATAGGTAGGTGACTAGAcc           >  8:32298/1‑148 (MQ=255)                                                                                                                                          cTTGCCTGCATCGGAGCCGCGGACGGCGAGgatgcaggcaagttccagcaaggccagctgacctgcaacatcaactacctcagccaggaacacgccagcctcggcgcccgctgcatggtcaaggggcgcatgcagtcgagcttccgca           <  4:296042‑M2/148‑119 (MQ=255)                                                                                                                                               cTGCATCGGAGCCGCGGACGGCGAGgatgcaggcaagttcctgcaaggccagctgacctgcaacatcaactacctcagccaggaacacgccagcctcggcgcc                                                   >  6:101102‑M2/1‑25 (MQ=255)                                                                                                                                               cTGCATCGGAGCCGCGGACGGCGAGgatgcaggcaagttcctgcaaggccagctgacctgcaacatcaactacctcagccaggaacacgccagcctcggcgcc                                                   <  5:101102‑M2/103‑79 (MQ=255)                                                                                                                                                 gCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATAGGTAGGTGACTAGACCAACGCCCgg  >  7:217552/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GCCAGCAAGTAGCCGTTGCCTTCGGGCACTATGCGGAAGCTCGACTGCATGCGCCCCTTGACCATGCAGCGGGCGCCGAGGCTGGCGTGTTCCTGGCTGAGGTAGTTGATGTTGCAGGTCAGCTGGCCTTGCAGGAACTTGCCTGCATCGGAGCCGCGGACGGCGAGGATGCCCTCGTGGGACAGGGGGCAGAA‑GAAAGCGGAATCGGCCATGGGTCATCGCGGTGGCTAAAGACTGGCGGCCATCATAGAACGCCGGTAACAAAATAGGTAGGTGACTAGACCAACGCCCGG  >  NC_002947/1624136‑1624428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.