New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1880920 =	68 (1.260)	3 (0.060)	3/246	NT	5.1%	coding (594/930 nt)	PP_1688	LysR family transcriptional regulator
	?	NC_002947	1880970 =	47 (0.920)					coding (644/930 nt)	PP_1688	LysR family transcriptional regulator

GTGCGGCCGCACGATGAACTCGGCCAGACGGGTGATGCCACCATCGTGCAAGGCCATCTGGGTCAGGGCATCGATATCGTCGCTGATCAATACAGTGCCGAATTCCGCTTCGAAGCGCAGGCCGTCCCGCATGAAGCCCCAGCGCAAGAAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1881073‑1880920 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagcggAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAGTTCATCGTGCGGCCG  >  NC_002947/1880970‑1881070                                                                                                                                                                                                                                                                 GTGCGGCCGCACGATGAACTCGGCCAGACGGGTGATGCCACCATCGTGCAAGGCCATCTGGGTCAGGGCATCGATATCGTCGCTGATCAATACAGTGCCGAATTCCGCTTCGAAGCGCAGGCCGTCCCGCAAGCAGCCACAGCGCAAGc                                                                                                            >  6:239335/1‑148      GCCGCACGATGAACTCGGCCAGACGGGTGATGCCACCATCGTGCAAGGCCATCTGGGTCAGGGCATCGATATCGTCGCTGATCAATACAGTGCCGAATTCCGCTTCGAAGCGCAGGCCGTCCCGCATGAAGCCCCAGCGCAAGAAGCGG                                                                                                       <  4:153269/149‑1                                                                                                         CCGCTTCGAAGCGCAGGCCGTCCCGCATGAAGCCCCAGCGCAAGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAGTTCA             >  3:216521/1‑140                                                                                                         CCGCTTCGAAGCGCAGGCCGTCCCGCATGAAGCCCCAGCGCAAGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAGTTCA             <  4:216521/140‑1                                                                                                           GCTTCGAAGCGCAGGCCGTCCCGCATGAAGCCCCAGCGCAAGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAGTTCATCGTGCGGCCG  >  4:302772/1‑149                                                                                                                                                                                                                                                                 GTGCGGCCGCACGATGAACTCGGCCAGACGGGTGATGCCACCATCGTGCAAGGCCATCTGGGTCAGGGCATCGATATCGTCGCTGATCAATACAGTGCCGAATTCCGCTTCGAAGCGCAGGCCGTCCCGCATGAAGCCCCAGCGCAAGAAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1881073‑1880920 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagcggAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAGTTCATCGTGCGGCCG  >  NC_002947/1880970‑1881070

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.