New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1880920 =	68 (1.260)	3 (0.060)	3/246	NT	5.1%	coding (594/930 nt)	PP_1688	LysR family transcriptional regulator
	?	NC_002947	1880970 =	47 (0.920)					coding (644/930 nt)	PP_1688	LysR family transcriptional regulator

CCTCACCCGGTTACCTGCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAGTTCATCGTGCGGCCGCACCTGGCCTCGGGGGCCTTGGTGCCGCTGTTC  >  NC_002947/1880826‑1881103                                                                                                                                                 |                                                                                                                                      ccTCACCCGGTTACCTGCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTc                                                                                                                                   >  3:132007/1‑149 (MQ=255)     aCCCGGTTACCTGCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCa                                                                                                                               >  2:45291/1‑149 (MQ=255)       ccGGTTACCTGCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATGCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACt                                                                                                                             >  1:109526/1‑149 (MQ=255)             aCCTGCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCATGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTAtt                                                                                                                        >  5:239335/1‑148 (MQ=255)                 gCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCgg                                                                                                                                 <  3:173505/135‑1 (MQ=255)                 gCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCgg                                                                                                                                 >  4:173505/1‑135 (MQ=255)                 gCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGAt                                                                                                                     >  3:283773/1‑147 (MQ=255)                 gCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGAt                                                                                                                     >  5:25954/1‑147 (MQ=255)                    gagCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGc                                                                                                                 >  1:338506/1‑148 (MQ=255)                         cTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGat                                                                                                           <  6:25954/149‑1 (MQ=255)                          tGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTAt                                                                                                                         >  7:52856/1‑134 (MQ=255)                          tGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGGGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTAt                                                                                                                         <  8:52856/134‑1 (MQ=255)                              gTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGa                                                                                                      >  6:204899/1‑149 (MQ=255)                                aCCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATg                                                                                                    >  3:59772/1‑149 (MQ=255)                                 ccTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGc                                                                                                   >  4:68774/1‑149 (MQ=255)                                      cACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGa                                                                                              <  6:203843/149‑1 (MQ=255)                                       aCGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGc                                                                                                   >  5:119918/1‑143 (MQ=255)                                       aCGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGc                                                                                                   <  6:119918/143‑1 (MQ=255)                                       aCGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGAc                                                                                             >  4:287050/1‑149 (MQ=255)                                         gCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGAccc                                                                                           <  5:219592/149‑1 (MQ=255)                                           ccGAGGCCTTGCGCGGGCACCGTTGCCTGGGGTTTCGCTATCCGGTGGATGGCCACTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTCTATTGATCAGCGACGATATCGATGCCCTGAcc                                                                                            >  3:34524/1‑146 (MQ=255)                                            cGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGTCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCg                                                                                                       <  3:290073/134‑1 (MQ=255)                                            cGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGTCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCg                                                                                                       >  4:290073/1‑134 (MQ=255)                                              aGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATg                                                                                      <  8:232743/149‑1 (MQ=255)                                               ggCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCt                                                                                                >  6:18321/1‑138 (MQ=255)                                               ggCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCt                                                                                                <  5:18321/138‑1 (MQ=255)                                                      cgcgGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCa                                                                              <  3:68774/149‑1 (MQ=255)                                                       gcgGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCAc                                                                             <  3:287050/149‑1 (MQ=255)                                                           gCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTg                                                                                                                       >  4:65430/1‑103 (MQ=255)                                                           gCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTg                                                                                                                       <  3:65430/103‑1 (MQ=255)                                                           gCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGAtg                                                                         >  1:204573/1‑149 (MQ=255)                                                           gCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGAtg                                                                         <  2:109526/149‑1 (MQ=255)                                                             aCCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGAtggt                                                                       <  4:132007/149‑1 (MQ=255)                                                             aCCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGAtggt                                                                       <  4:283773/149‑1 (MQ=255)                                                                      tGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCAcc                                                              >  6:177320/1‑149 (MQ=255)                                                                        gtgtTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGa                                                                                              <  4:82028/115‑1 (MQ=255)                                                                        gtgtTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGa                                                                                              >  3:82028/1‑115 (MQ=255)                                                                               gCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGcc                                                     >  7:166849/1‑149 (MQ=255)                                                                                cTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCTGAATTCGGCACTGTATTGATCAGCGACGATCTCGATGCCCTGACCCAGAt                                                                                       <  6:233570/114‑1 (MQ=255)                                                                                cTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCTGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGAt                                                                                       >  5:233570/1‑114 (MQ=255)                                                                                   tCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGa                                                   <  4:59772/147‑1 (MQ=255)                                                                                   tCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAg                                                  <  4:8529/148‑1 (MQ=255)                                                                                     cGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAGTTc                                               <  5:204899/149‑1 (MQ=255)                                                                                       gTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAGTTCAt                                             >  3:158847/1‑149 (MQ=255)                                                                                        tGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAGTTCATc                                            <  8:166849/149‑1 (MQ=255)                                                                                            tGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAGTTCATCGTGc                                        <  2:338506/149‑1 (MQ=255)                                                                                               ccgcttcgaagcgcaggccgtcccgcatgaagccccagcgcaagaagcggAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAGTTCa                                              <  4:216521‑M2/90‑1 (MQ=255)                                                                                               ccgcttcgaagcgcaggccgtcccgcatgaagccccagcgcaagaagcggAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAGTTCa                                              >  3:216521‑M2/51‑140 (MQ=255)                                                                                               CCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAGTTCATCGTGCGGc                                     <  4:153269‑M1/149‑1 (MQ=255)                                                                                                 gcttcgaagcgcaggccgtcccgcatgaagccccagcgcaagaagcggAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAGTTCATCGTGCGGCCg                                   >  4:302772‑M2/49‑149 (MQ=255)                                                                                                    gCTTGCGCTGTGGCTGCTTGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAGTTCATCGTGCGGCCGCAc                                >  6:239335‑M1/2‑149 (MQ=255)                                                                                                                  ttCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATAACGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAGTTCATCGTGCGGCCGCACCTGGCCTCGGGGGc                  >  1:272344/1‑149 (MQ=255)                                                                                                                          ggACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAGTTCATCGTGCGGCCGCACCTGGCCTCGGGGGCCTTGGTGc          >  7:104342/1‑149 (MQ=255)                                                                                                                                    cggttCGAAGCGGAATTCGGCAGTGTATTGATCAGCTACGATATCGATGCCCTGACCCAGATGGCCTTGCACTATGGTGGCATCACCCGTCTGGCCGAGTTCTTCGTGCGGCCGCACCTGGCCTCGGGGGCCTTGGTGCCGCTGTTc  <  8:104342/144‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                      CCTCACCCGGTTACCTGCAGAGCGCTGGCGTACCTGCCACGCCCGAGGCCTTGCGCGGGCACCGTTGCCTGGTGTTTCGCTATCCGGTGGATGGCCGCTTCTTGCGCTGGGGCTTCATGCGGGACGGCCTGCGCTTCGAAGCGGAATTCGGCACTGTATTGATCAGCGACGATATCGATGCCCTGACCCAGATGGCCTTGCACGATGGTGGCATCACCCGTCTGGCCGAGTTCATCGTGCGGCCGCACCTGGCCTCGGGGGCCTTGGTGCCGCTGTTC  >  NC_002947/1880826‑1881103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.