| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1977647 = | 69 (1.280) | 3 (0.060) | 3/244 | NT | 5.5% | coding (1311/2241 nt) | PP_1770 | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| ? | NC_002947 | 1977733 = | 39 (0.770) | coding (1397/2241 nt) | PP_1770 | 3‑phosphoshikimate 1‑carboxyvinyltransferase | |||||
CGGCCAGCAGCAGGCAGGATTTGACCTGGGCGCTAGCCATCGGCAGCGTGTAGGTCAGCCCTTTGAGCTTGTGGCCACCGCGGATGGTCAGCGGCGGACGGCCGTCCGGGCCGGTCTCGACCACAGCACCCATTTCGCGCAGCGGGTTGGCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1977801‑1977647‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccacaAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGTCACTGAGCCTGCGCCTACCCGTGACCACACCGAGCGCATGCTGCGCGG > NC_002947/1977733‑1977877 CGGCCTGCAGCAGGCAGGATTTGACCTGGGCGCTAGGCATGGGCAGCGTGTAGGTCAGCCCTTTGAGCTTGTGGCCACCGCGGATGGTCAGCGGCGGACGGGCGTCCGGGCCGGTCTCGACCACAGCACCCATTTCGCGCAGCGGGTTG < 7:231026/149‑1CGGCCAGCAGCAGGCAGGATTTGACCTGGGCGCTAGCCATCGGCAGCGTGTAGGTCAGCCCTTTGAGCTTGTGGCCACCGCGGATGGTCAGCGGCGGACGGCCGTCCGGGCCGGTCTCGACCACAGCACCCATTTCGCGCAGCGGGTTG < 6:174748/149‑1 CTTGTGGCCACCGCGGATGGTCAGCGGCGGACGGCCGTCCGGGCCGGTCTCGACCACAGCACCCATTTCGCGCAGCGGGTTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCT > 4:100828/1‑149 GTGGCCACCGCGGATGGTCAGCGGCGGACGGCCGTCCGGGCCGGTCTCGACCACAGCACCCATTTCGCGCAGCGGGTTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGC < 7:304018/145‑1 GTGGCCACCGCGGATGGTCAGCGGCGGACGGCCGTCCGGGCCGGTCTCGACCACAGCACCCATTTCGCGCAGCGGGTTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGC > 8:304018/1‑145 CACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGTCACTGCGCCTGCGCCTACCCGTGACCACACCGAGCGCATGCTGCGCGG > 8:230271/1‑149 CACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGTCACTGAGCCTGCGCCTACCCGTGACCACACCGAGCGCATGCTGCGCGG > 4:201720/1‑149 CGGCCAGCAGCAGGCAGGATTTGACCTGGGCGCTAGCCATCGGCAGCGTGTAGGTCAGCCCTTTGAGCTTGTGGCCACCGCGGATGGTCAGCGGCGGACGGCCGTCCGGGCCGGTCTCGACCACAGCACCCATTTCGCGCAGCGGGTTGGCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1977801‑1977647‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccacaAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGTCACTGAGCCTGCGCCTACCCGTGACCACACCGAGCGCATGCTGCGCGG > NC_002947/1977733‑1977877 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |