New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1977647 =	69 (1.280)	3 (0.060)	3/244	NT	5.5%	coding (1311/2241 nt)	PP_1770	3‑phosphoshikimate 1‑carboxyvinyltransferase
	?	NC_002947	1977733 =	39 (0.770)					coding (1397/2241 nt)	PP_1770	3‑phosphoshikimate 1‑carboxyvinyltransferase

GTCAGCCGTTCGATGTCACCATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGTCACTGAGCCTGCGCCTACCCGTGACCACACCGAGCGCATGCTGCGCGG  >  NC_002947/1977586‑1977877                                                                                                                                                      |                                                                                                                                                 gTCAGCCGTTCGATGTCACCATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAg                                                                                                                                                 >  3:122680/1‑149 (MQ=255) agcaggcaggatttgacctgggcgctagccatcggcagcgtgtaggtcagccctttgagctTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAg                                                                                                                                                 >  4:100828‑M1/62‑149 (MQ=255)    aGCCGTTCGATGTCACCATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTc                                                                                                                                              <  6:221039/149‑1 (MQ=255)     gCCGTTCGATGTCACCATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTc                                                                                                                                              >  2:316480/1‑148 (MQ=255)     gCCGTTCGATGTCACCATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTc                                                                                                                                              <  1:316480/148‑1 (MQ=255)            gATGTCACCATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCCAAAA‑CGCCCTGCCCCCGAGGACCAACCGCGGTGGCCACAACCTAAAAgg                                                                                                                                         >  1:283342/1‑147 (MQ=255)            gATGTCACCATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑CGAGCGCCCGACGGCCGCGGCCCAGCCGCGGGGGGCCCACCCGCAAAGGGc                                                                                                                                       >  1:287269/1‑149 (MQ=255)             aTGTCACCATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTg                                                                                                                                     <  8:190736/149‑1 (MQ=255)             aTGTCACCATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTg                                                                                                                                     <  3:322852/149‑1 (MQ=255)                tCACCATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGTGGTGGCCACAAGCTCAAAGGGCTGAc                                                                                                                                   <  5:67358/148‑1 (MQ=255)                                 gCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGc                                                                                                                 >  7:156326/1‑149 (MQ=255)                                   cTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGTGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCCTCCGCCGCGGCCCCTCCGCGGTGGCCACAAGCTGAAAGGGCTGACCTACCCGCTGCCGATGGc                                                                                                                 >  1:239937/1‑147 (MQ=255)                                    tCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAg                                                                                                              >  1:213419/1‑149 (MQ=255)                                    tCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAg                                                                                                              >  2:61591/1‑149 (MQ=255)                                              aGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTc                                                                                                    <  2:213419/149‑1 (MQ=255)                                                  cccGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAACCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCaaa                                                                                                 >  6:34999/1‑148 (MQ=255)                                                   ccGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATc                                                                                               <  1:150081/149‑1 (MQ=255)                                                     gATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATcct                                                                                             <  4:122680/149‑1 (MQ=255)                                                          aCCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGCCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATcctgcct                                                                                         >  6:192494/1‑148 (MQ=255)                                                              cttgtggccaccgcggatggtcagcggcggacggccgtccgggccggtctcgaccacagcacccatttcgcgcagcgggttggccacaAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCctgct                                                                                      >  4:100828‑M2/89‑149 (MQ=255)                                                                 gtggccaccgcggatggtcagcggcggacggccgtccgggccggtctcgaccacagcacccatttcgcgcagcgggttggccacaAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCctgcctgc                                                                                       <  7:304018‑M2/60‑1 (MQ=255)                                                                 gtggccaccgcggatggtcagcggcggacggccgtccgggccggtctcgaccacagcacccatttcgcgcagcgggttggccacaAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCctgcctgc                                                                                       >  8:304018‑M2/86‑145 (MQ=255)                                                                    CAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCg                                                                              <  6:174748‑M1/149‑1 (MQ=255)                                                                    CAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGCCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCCATGCCTAGCGCCCAGGTCAAATCCTGCCTGCTGCAGGCCg                                                                              <  7:231026‑M1/149‑1 (MQ=255)                                                                      aCCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTggccggc                                                                            <  1:61591/149‑1 (MQ=255)                                                                        ccGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCt                                                                          <  2:287269/149‑1 (MQ=255)                                                                        ccGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCt                                                                          <  2:283342/149‑1 (MQ=255)                                                                          gCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTg                                                                                                                         <  7:100110/100‑1 (MQ=255)                                                                          gCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTg                                                                                                                         >  8:100110/1‑100 (MQ=255)                                                                          gCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATcctgcc                                                                                          >  7:154676/1‑131 (MQ=255)                                                                          gCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATcctgcc                                                                                          <  8:154676/131‑1 (MQ=255)                                                                                 gAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCg                                                                  >  7:27513/1‑148 (MQ=255)                                                                                  aaaTGGGTGCTGTGTGCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGaa                                                                <  7:164154/149‑1 (MQ=255)                                                                                     tGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGc                                                             <  5:174748/149‑1 (MQ=255)                                                                                      gggTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACCAGCTCAAAGGGCTGCCCTACACGCTGCCGATGGCTAGCGCCCCGGTCAAAGCCTGCCTGCTGCTGGCCGGCCTGTCCGCCGACGGCa                                                            >  5:229208/1‑149 (MQ=255)                                                                                       ggTGCTGTGGTCGAGAGCGGCCC‑GGA‑CGGCCGTCCGGCGCTGACCATCCGCGGTGGCCACTAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCaa                                                           <  8:231026/149‑1 (MQ=255)                                                                                              tgGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACt                                                    <  2:239937/149‑1 (MQ=255)                                                                                                gTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACaa                                                                                                                                                  >  2:146346/1‑53 (MQ=255)                                                                                                gTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACaa                                                                                                                                                  <  1:146346/53‑1 (MQ=255)                                                                                                 tCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGt                                                  >  3:100869/1‑148 (MQ=255)                                                                                                   gagaCCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGTCAc                                               <  8:288346/149‑1 (MQ=255)                                                                                                             c‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGTCACTGAGCCTgcg                                     >  6:6684/1‑149 (MQ=255)                                                                                                               ggA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGTCACTGAGCCTgcgc                                    <  4:100869/149‑1 (MQ=255)                                                                                                                    ggCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGTCACTGAGCCTGCGCCTAc                                >  8:75252/1‑149 (MQ=255)                                                                                                                        gTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGaa                                                                >  4:307615/1‑113 (MQ=255)                                                                                                                        gTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGaa                                                                <  3:307615/113‑1 (MQ=255)                                                                                                                         tCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGTCACTGAGCCTGCGCCTACCCGTg                           <  5:192494/149‑1 (MQ=255)                                                                                                                                cTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGCCCTGTACGCCGAAGGCAAGACCACTGTCACTGAGCCTGCGCCTACCCGTGACCacac                    <  5:34999/149‑1 (MQ=255)                                                                                                                                   aCCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGTCACTGAGCCTGCGCCTACCCGTGACCACAcc                   <  1:322356/147‑1 (MQ=255)                                                                                                                                     cATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGTCACTGAGCCTGCGCCTACCCGTGACCACACCGAgc               >  2:269743/1‑149 (MQ=255)                                                                                                                                      aTCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGTCACTGAGCCTGCGCCTACCCGTGACCACACCGAgcg              >  5:150847/1‑149 (MQ=255)                                                                                                                                             gTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGTCACTGAGCCTGCGCCTACCCGTGACCACACCGAGCGCAtgctg       >  1:136110/1‑149 (MQ=255)                                                                                                                                                  cacaAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGTCACTGCGCCTGCGCCTACCCGTGACCACACCGAGCGCATGCTGCGCgg  >  8:230271‑M2/5‑149 (MQ=255)                                                                                                                                                  cacaAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGTCACTGAGCCTGCGCCTACCCGTGACCACACCGAGCGCATGCTGCGCgg  >  4:201720‑M2/5‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                 GTCAGCCGTTCGATGTCACCATGACCGGCGACGCCTCGCTGTCCAAGCGCCCGATGAACCGTGTGGCCAACCCGCTGCGCGAAATGGGTGCTGTGGTCGAGACCGGCCC‑GGA‑CGGCCGTCCGCCGCTGACCATCCGCGGTGGCCACAAGCTCAAAGGGCTGACCTACACGCTGCCGATGGCTAGCGCCCAGGTCAAATCCTGCCTGCTGCTGGCCGGCCTGTACGCCGAAGGCAAGACCACTGTCACTGAGCCTGCGCCTACCCGTGACCACACCGAGCGCATGCTGCGCGG  >  NC_002947/1977586‑1977877

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.