New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2470880 =	48 (0.890)	3 (0.060)	3/242	NT	6.3%	coding (445/1182 nt)	PP_2165	two‑component system response regulator
	?	NC_002947	2470925 =	45 (0.890)					coding (490/1182 nt)	PP_2165	two‑component system response regulator

CACGCGGAAATAATCGACAAAATCACCCGAAAGGTACAACGACGGGATGATCTGGTGCTCGAAGGCGAACTCGCCGGCCACCCAGGGGCTTTCCGGCAACATGTTCATCTGCACCTGGCGACCGGCGGTCTGGTCCTCCTGCAACAGGTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2471032‑2470880 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggtgcagATGAACATGTTGCCGGAAAGCCCCTGGGTGGCCGGCGAGTTCGCCTTCGAGCACCAGATCATCCCGTCGTTGTACCTTTCGGGTGATTTTGTCGATTATTTCCGCGTGGACGAGCGGCGCATTGCTTTCTACCTCGCCGATGTATCC  >  NC_002947/2470925‑2471071                                                                                                                                                                                                                                                                                                              CACGCGGAAATAATCGACAAAATCACCCGAAAGGTACAACGACGGGATGATCTGGTGCTCGAAGGCGAACTCGCCGGCCACCCAGGGGCTTTCCGGCAACATGTTCATCTGCACCTGGCGACCGGCGGTCTGGTCCTCCTGCAACAGGT                                                                                                                                                         >  8:63153/1‑149  ACGCGGAAATAATCGACAAAATCACCCGAAAGGTACAACGACGGGATGATCTGGTGCTCGAAGGCGAACTCGCCGGCCACCCAGGGGCTTTCCGGCAACATGTTCATCTGCACCTGGCGACCGGCGGTCTGGTCCTCCTGCAACAGGTG                                                                                                                                                        >  2:132589/1‑149                                        CGACGGGATGATCTGGTGCTCGAAGGCGAACTCGCCGGCCACCCAGGGGCTTTCCGGCAACATGTTCATCTGCACCTGGCGACCGGCGGTCTGGTCCTCCTGCAACAGG                                                                                                                                                          <  5:187602/109‑1                                        CGACGGGATGATCTGGTGCTCGAAGGCGAACTCGCCGGCCACCCAGGGGCTTTCCGGCAACATGTTCATCTGCACCTGGCGACCGGCGGTCTGGTCCTCCTGCAACAGG                                                                                                                                                          >  6:187602/1‑109                                                                                                             CTGCACCTGGCGACCGGCGGTCTGGTCCTCCTGCAACAGGTGCAGATGAACATGTTGCCGGAAAGCCCCTGGGTGGCCGGCGAGTTCGCCTTCGAGCACCAGATCATCCCGTCGTTGTACCTTTCGGGTGATTATGTCGATTATTTCCG                                             >  7:246790/1‑149                                                                                                              TGCACCTGGCGACCGGCGGTCTGGTCCTCCTGCAACAGGTGCAGATGATCATGTTGCCGGAAAGCCCCTGGGTGGCCGGC                                                                                                                 <  1:210622/80‑1                                                                                                              TGCACCTGGCGACCGGCGGTCTGGTCCTCCTGCAACAGGTGCAGATGAACATGTTGCCGGAAAGCCCCTGGGTGGCCGGC                                                                                                                 >  2:210622/1‑80                                                                                                                                                       CAGATGAACATGTTGCCGGAAAGCCCCTGGGTGGCCGGCGAGTTCGCCTTCGAGCACCAGATCATCCCGTCGTTGTACCTTTCGGGTGATTTTGTCGATTATTTCCGCGTGGACGAGCGGCGCATTGCTTTCTACCTCGCC           <  1:76578/141‑1                                                                                                                                                       CAGATGAACATGTTGCCGGAAAGCCCCTGGGTGGCCGGCGAGTTCGCCTTCGAGCACCAGATCATCCCGTCGTTGTACCTTTCGGGTGATTTTGTCGATTATTTCCGCGTGGACGAGCGGCGCATTGCTTTCTACCTCGCC           >  2:76578/1‑141                                                                                                                                                        AGATGAACATGTTGCCGGAAAGCCCCTGGGTGGCCGGCGAGTTCGCCTTCGAGCACCAGATCATCCCGTCGTTGTACCTTTCGGGTGATTTTGTCGATTATTTCCGCGTGGACGAGCGGCGCATTGCTTTCTACCTCGCCGATGTATCC  <  6:16232/149‑1                                                                                                                                                                                                                                                                                                              CACGCGGAAATAATCGACAAAATCACCCGAAAGGTACAACGACGGGATGATCTGGTGCTCGAAGGCGAACTCGCCGGCCACCCAGGGGCTTTCCGGCAACATGTTCATCTGCACCTGGCGACCGGCGGTCTGGTCCTCCTGCAACAGGTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2471032‑2470880 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggtgcagATGAACATGTTGCCGGAAAGCCCCTGGGTGGCCGGCGAGTTCGCCTTCGAGCACCAGATCATCCCGTCGTTGTACCTTTCGGGTGATTTTGTCGATTATTTCCGCGTGGACGAGCGGCGCATTGCTTTCTACCTCGCCGATGTATCC  >  NC_002947/2470925‑2471071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.