New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2773525	44 (0.810)	3 (0.060)	3/238	NT	6.9%	coding (529/1053 nt)	calA	coniferyl alcohol dehydrogenase
	?	NC_002947	= 2773551	41 (0.830)					coding (555/1053 nt)	calA	coniferyl alcohol dehydrogenase

AGCAACACCATGGGCGGGTACTCCAGCAGCATCGTGGTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2773369‑2773525 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcccaggccG‑CCCATGCCGAGGATGCCGATCTTGTGGCCTGGGCCAACGCCGTGGTGCTTGAGCGGCGAATAGGTGGTGATGCCGGCACACAGAATAGGTGCAGCGCTGGGCAGGTCCATGCCGGCCGGTATGCGCACCACGAAGTGCTCGCTGAC  <  NC_002947/2773551‑2773405                                                                                                                                                                                                                                                                                                                   AGCAAGACCATGGGCGGGTACTCCAGCAGCATCGTGGTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGG                                                                                                                                                              <  3:238112/149‑1    AACACCATGGGCGGGTACTCCAGCAGCATCGTGGTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCC                                                                                                                                                            >  1:53488/1‑148      CACCATGGGCGGGTACTCCAGCAGCATCGTGGTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAG                                                                                                                                                         <  7:189064/149‑1       ACCATGGGCGGGTACTCCAGCAGCATCGTGGTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGG                                                                                                                                                        <  4:183955/149‑1        CCATGGGCGGGTACTCCAGCAGCATCGTGGTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGG                                                                                                                                                              <  8:288165/142‑1        CCATGGGCGGGTACTCCAGCAGCATCGTGGTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGG                                                                                                                                                              >  7:288165/1‑142         CATGGGCGGGTACTCCAGCAGCATCGTGGTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGC                                                                                                                                                       >  4:50619/1‑148                                               ACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCG‑CCCATGCCGAGGATGCCGATCTTGTGGCCTGGG                                                                                                                   <  5:156312/145‑1                                               ACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCG‑CCCATGCCGAGGATGCCGATCTTGTGGCCTGGG                                                                                                                   >  6:156312/1‑145                                                CTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCCGCCCCATGCCGAGGATGCCGATCTTGTGGCCTGGGCCAA                                                                                                               <  1:225674/149‑1                                                                                                                                                   TGGCCCAGGCCG‑CCCATGCCGAGGATGCCGATCTTGTGGCCTGGGCCAACGCCGTGGTGCTTGAGCGGCGAATAGGTGGTGATGCCGGCACACAGAATAGGTGCAGCGCTGGGCAGGTCCATGCCGGCCGGTATGCGCACCACGAAGT            <  6:35207/148‑1                                                                                                                                                     GCCCAGGCCG‑CCCATGCCGAGGATGCCGATCTTGTGGCCTGGGCCAACGCCGTGGTGCTTGAGCGGCGAATAGGTGGTGATGCCGGCACACAGAATAGGTGCAGCGCTGGGCAGGTCCATGCCGGCCGGTATGCGCACCACGAAGTGCT         >  1:178582/1‑149                                                                                                                                                     GCCCAGGCCG‑CCCATGCCGAGGATGCCGATCTTGTGGCCTGGGCCAACGCCGTGGTGCTTGAGCGGCGAATAGGTGGTGATGCCGGCACACAGAATAGGTGCAGCGCTGGGCAGGTCCATGCCGGCCGGTATGCGCACCACGAAGTGCT         >  2:53488/1‑149                                                                                                                                                       CCAGGCCG‑CCCATGCCGAGGATGCCGATCTTGTGGCCTGGGCCAACGCCGTGGTGCTTGAGCGGCGAATAGGTGGTGATGCCGGCACACAGAATAGGTGCAGCGCTGGGCAGGTCCATGCCGGC                                >  3:5529/1‑124                                                                                                                                                       CCAGGCCG‑CCCATGCCGAGGATGCCGATCTTGTGGCCTGGGCCAACGCCGTGGTGCTTGAGCGGCGAATAGGTGGTGATGCCGGCACACAGAATAGGTGCAGCGCTGGGCAGGTCCATGCCGGC                                <  4:5529/124‑1                                                                                                                                                         AGGCCG‑CCCATGCCGAGGATGCCGATCTTGTGGCCTGGGCCAACGCCGTGGTGCTTGAGCGGCGAATAGGTGGTGATGCCGGCACACAGAATAGGTGCAGCGCTGGGCAGGTCCATGCCGGCCGGTATGCGCACCACGAAGTGCTCGCT     <  2:91587/149‑1                                                                                                                                                            CCG‑CCCATGCCGAGGATGCCGATCTTGTGGCCTGGGCCAACGCCGTGGTGCTTGAGCGGCGAATAGGTGGTGATGCCGGCACACAGAATAGGTGCAGCGCTGGGCAGGTCCATGCCGGCCGGTATGCGCACCACGAAGTGCTCGCTGAC  <  6:196041/149‑1                                                                                                                                                             CG‑CCCATGCCGAGGATGCCGATCTTGTGGCCTGGGCCAACGCCGTGGTGCTTGAGCGGCGAATAGGTGGTGATGCCGGCACACAGAATAGGTGCAGCGCTGGGCAGGTCCATGCCGGCCGGTATGCGCACCACGAAGTGCTCGCTGAC  >  2:4336/1‑148                                                                                                                                                                                                                                                                                                                   AGCAACACCATGGGCGGGTACTCCAGCAGCATCGTGGTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCACGGCGTTGGCCCAGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2773369‑2773525 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcccaggccG‑CCCATGCCGAGGATGCCGATCTTGTGGCCTGGGCCAACGCCGTGGTGCTTGAGCGGCGAATAGGTGGTGATGCCGGCACACAGAATAGGTGCAGCGCTGGGCAGGTCCATGCCGGCCGGTATGCGCACCACGAAGTGCTCGCTGAC  <  NC_002947/2773551‑2773405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.