New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2773525	44 (0.810)	3 (0.060)	3/238	NT	6.9%	coding (529/1053 nt)	calA	coniferyl alcohol dehydrogenase
	?	NC_002947	= 2773551	41 (0.830)					coding (555/1053 nt)	calA	coniferyl alcohol dehydrogenase

GGTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCATGTGATCGTCTCCACCGATGCCGAGCAGATGCGCGC  >  NC_002947/2773404‑2773697                                                                                                                                                      |                                                                                                                                                    ggTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCAGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCACGCCCCAAGATCCGCCTACTCCGCATGgg‑cc                                                                                                                                                    >  6:190321/1‑148 (MQ=255)  gTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑Cgg                                                                                                                                                   <  6:196041‑M2/149‑3 (MQ=255)  gTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑Cg                                                                                                                                                    >  2:4336‑M2/1‑147 (MQ=255)     aGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑Cggcct                                                                                                                                                <  2:91587‑M2/149‑6 (MQ=255)         aGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑Cggcctgggc                                                                                                                                            >  1:178582‑M2/1‑140 (MQ=255)         aGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑Cggcctgggc                                                                                                                                            >  2:53488‑M2/1‑140 (MQ=255)            aCTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑Cggcctgggcca                                                                                                                                          <  6:35207‑M2/148‑12 (MQ=255)                 gtggggCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATGCTGTGGGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATggg                                                                                                                                    <  5:190321/149‑1 (MQ=255)                         cATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAAc                                                                                                                            <  5:128734/149‑1 (MQ=255)                         cATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAAc                                                                                                                            >  6:128734/1‑149 (MQ=255)                          aTACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACt                                                                                                                           >  2:264989/1‑149 (MQ=255)                                gccggcATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑Cggcctgg                                                                                                                                              <  4:5529‑M2/124‑8 (MQ=255)                                gccggcATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑Cggcctgg                                                                                                                                              >  3:5529‑M2/1‑117 (MQ=255)                                      aTGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCt                                                                                                               <  7:34522/149‑1 (MQ=255)                                          aCCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGt                                                                                                           <  3:178148/149‑1 (MQ=255)                                                    cgcTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGGATTGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGa                                                                                                 <  5:196041/149‑1 (MQ=255)                                                    cgcTGCACCTATTCTGTGTGCCGGAATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGTCACATGGGCATCAAACCGGCCAAGGCCCTGGGTGCGGAAGTGa                                                                                                 <  1:184375/149‑1 (MQ=255)                                                    cgcTGCACCTATTCTGTGTGCCGGAATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGTCACATGGGCATCAAACCGGCCAAGGCCCTGGGTGCGGAAGTGa                                                                                                 <  1:178815/149‑1 (MQ=255)                                                            cTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGtt                                                                                          >  4:281648/1‑148 (MQ=255)                                                                 cTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTAcgcg                                                                                    >  2:295298/1‑149 (MQ=255)                                                                  tgtgtgCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGGCACAAGATAGGCATACTCGGCATGGG‑CGGCCTGGGCCACATGGGCCTCAAACATGCCAATGCCCAGGGTGCGGAAGTGACCCTGTTTACgcgc                                                                                   >  2:298688/1‑149 (MQ=255)                                                                  tgtgtgCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTCCgcgc                                                                                   >  8:297646/1‑149 (MQ=255)                                                                    tgtgCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACgcgc                                                                                   <  8:160609/147‑1 (MQ=255)                                                                    tgtgCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTc                                                                                 >  2:41623/1‑149 (MQ=255)                                                                     gtgCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTcc                                                                                >  4:56099/1‑149 (MQ=255)                                                                           gCATCACCACCTATTCGCCGCTCAAGCACCACGGGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCcc‑aagc                                                                          >  1:41619/1‑149 (MQ=255)                                                                           gCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCaa                                                                                                                     <  5:203700/106‑1 (MQ=255)                                                                           gCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCaa                                                                                                                     >  6:203700/1‑106 (MQ=255)                                                                             aTCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCcc‑aagccaa                                                                       <  5:35207/149‑1 (MQ=255)                                                                              tCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCcc‑aagccaag                                                                      <  1:20838/149‑1 (MQ=255)                                                                                accaccTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGc                                                                    >  5:246869/1‑149 (MQ=255)                                                                                 ccaccTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGCAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGcc                                                                   >  3:291010/1‑149 (MQ=255)                                                                                  caccTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGCCg                                                                  <  2:41619/149‑1 (MQ=255)                                                                                    ccTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCAGCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGCCGAg                                                                <  3:50619/149‑1 (MQ=255)                                                                                     cTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGCCGAgg                                                               <  7:139274/149‑1 (MQ=255)                                                                                     cTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGCCGAg                                                                >  7:310823/1‑148 (MQ=255)                                                                                           gccgcTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGCCGAGGAAGCTc                                                         <  1:264989/149‑1 (MQ=255)                                                                                             cgcTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGCCGAGGAAGCTcgc                                                       <  6:246869/149‑1 (MQ=255)                                                                                                  aaGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGCCGAGGAAGCTCGCCGCCa                                                  <  3:56099/149‑1 (MQ=255)                                                                                                  aaGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGCCGAGGAAGCTCGCCGCCa                                                  <  3:281648/149‑1 (MQ=255)                                                                                                     caccac‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGCCGAGGAAGCTCGCCGCCAggg                                               >  4:303710/1‑149 (MQ=255)                                                                                                      accac‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGCCGAGGAAGCTCGCCGCCAgggg                                              >  1:100698/1‑149 (MQ=255)                                                                                                      accac‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGCCGAGGAAGCTCGCCGCCAgggg                                              <  8:310823/149‑1 (MQ=255)                                                                                                        cac‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGCCGAGGAAGCTCGCCGCCa                                                  <  2:316205/143‑1 (MQ=255)                                                                                                        cac‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGCCGAGGAAGCTCGCCGCCa                                                  >  1:316205/1‑143 (MQ=255)                                                                                                          c‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCCAAAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGcc                                           <  1:41623/149‑1 (MQ=255)                                                                                                            ggCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGa                                         >  8:172793/1‑149 (MQ=255)                                                                                                                ttGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGGGCggcctgggccaacgccgtggtgcttgagcggcgaataggtggtgatgccggcacacagaataggtgcagcgctgggcaggtccatgccggccggtatgcgcaccacgaag                                       <  1:225674‑M2/149‑111 (MQ=255)                                                                                                                    cccAGGCCACAAGATCGGCATCCTCGGCATGGG‑Cggcctgggccaacgccgtggtgcttgagcggcgaataggtggtgatgccggcacacagaataggtgcagcgctgggcaggtccatgccggccggtatgcgcaccacgaagt                                      >  6:156312‑M2/1‑34 (MQ=255)                                                                                                                    cccAGGCCACAAGATCGGCATCCTCGGCATGGG‑Cggcctgggccaacgccgtggtgcttgagcggcgaataggtggtgatgccggcacacagaataggtgcagcgctgggcaggtccatgccggccggtatgcgcaccacgaagt                                      <  5:156312‑M2/145‑112 (MQ=255)                                                                                                                        ggCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCATGTGATCGt                             <  3:303710/149‑1 (MQ=255)                                                                                                                                    ggCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGc                                                                    >  5:346665/1‑98 (MQ=255)                                                                                                                                    ggCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGc                                                                    <  6:346665/98‑1 (MQ=255)                                                                                                                                                   gg‑cggcCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCATGTGATCGTCTCCACCGATGCCGAGCAGATgcgcgc  <  6:294513/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    GGTCAGCGAGCACTTCGTGGTGCGCATACCGGCCGGCATGGACCTGCCCAGCGCTGCACCTATTCTGTGTGCCGGCATCACCACCTATTCGCCGCTCAAGCACCAC‑GGCGTTGGCCCAGGCCACAAGATCGGCATCCTCGGCATGGG‑CGGCCTGGGCCACATGGGCATCAAACTGGCCAAGGCCCTGGGTGCGGAAGTGACCCTGTTTACGCGCTCCC‑AAGCCAAGGCCGAGGAAGCTCGCCGCCAGGGGGCCGACCATGTGATCGTCTCCACCGATGCCGAGCAGATGCGCGC  >  NC_002947/2773404‑2773697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.