New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2897517 =	43 (0.800)	5 (0.100)	4/246	NT	11.3%	coding (836/945 nt)	PP_2551	LysR family transcriptional regulator
	?	NC_002947	2897553 =	38 (0.740)					coding (872/945 nt)	PP_2551	LysR family transcriptional regulator

GCACCTATCCCCAGCCGAATAACCTCGCTTACCGCATAGCTGCTATGGCGAACCCGCATGCCCGCCCTGCACCCCGAACTGCGACTGGCGCCACAACTCGAATACCCGGTTACGCAACCAGCGGTGCTCGGCCGAGGCCTGCAGGCGCTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2897668‑2897517 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctggtTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGC  >  NC_002947/2897553‑2897696                                                                                                                                                                                                                                                                                                          GCACCTATCCCCAGCCGAATAACCTCGCTTACCGCATAGCTGCTATGGCGAACCCGCATGCCCGCCCTGCACCCCGAACTGCGACTGGCGCCACAACTCGAATACCCGGTTACGCAACCAGCGGTGCTCGGCCGAGGCCTGCAGGCGCT                                                                                                                                                     >  4:129595/1‑149     CTATCCCCAGCCGAATAACCTCGCTTACCGCATAGCTGCTATGGCGAACCCGCATGCCCGCCCTGCACCCCGAACTGCGAGTGGCGCCACAACTCGAATACCCGGTTACGCAACCAGCGGTGCTCGGCCGAGGCCTGCAGGCGCTGG                                                                                                                                                   >  6:164001/1‑147     CTATCCCCAGCCGAATAACCTCGCTTACCGCATAGCTGCTATGGCGAACCCGCATGCCCGCCCTGCACCCCGAACTGCGACTGGCGCCACAACTCGAATACCCGGTTACGCAACCAGCGGTGCTCGGCCGAGGCCTGCAGGCGCTGG                                                                                                                                                   <  5:164001/147‑1                                                                                                               ctCGCAAGCAGCGGTGCTCGGCCGAGGCCTGCAGGCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGG                                        <  7:186128/146‑1                                                                                                                  GCAACCAGCGGTGCTCGGCCGAGGCCTGCAGGCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGAGACAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGTCTGG                                        >  8:186128/1‑145                                                                                                                    AACCAGCGGTGCTCGGCCGAGGCCTGCAGGCGCTGGTTGCGTACCCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATACGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAG                                  >  5:191959/1‑149                                                                                                                    AACCAGCGGTGCTCGGCCGAGGCCTGCAGGCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGC                                           <  5:105994/140‑1                                                                                                                    AACCAGCGGTGCTCGGCCGAGGCCTGCAGGCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGC                                           >  6:105994/1‑140                                                                                                                                                    CTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGCCTGGGGCATTGTGTTGATTGTGC  >  8:103664/1‑149                                                                                                                                                                                                                                                                                                          GCACCTATCCCCAGCCGAATAACCTCGCTTACCGCATAGCTGCTATGGCGAACCCGCATGCCCGCCCTGCACCCCGAACTGCGACTGGCGCCACAACTCGAATACCCGGTTACGCAACCAGCGGTGCTCGGCCGAGGCCTGCAGGCGCTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2897668‑2897517 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctggtTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGC  >  NC_002947/2897553‑2897696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.